BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2238.p (463 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094170|ref|YP_001099245.1| putative outer membrane protein... 193 2e-50 gi|134095560|ref|YP_001100635.1| outer membrane transport protei... 154 1e-38 gi|134095881|ref|YP_001100956.1| outer membrane transport protei... 129 4e-31 gi|134095761|ref|YP_001100836.1| putative outer membrane transpo... 126 2e-30 gi|134095533|ref|YP_001100608.1| putative RND efflux system, out... 103 2e-23 >gi|134094170|ref|YP_001099245.1| putative outer membrane protein [Herminiimonas arsenicoxydans] Length = 469 Score = 193 bits (490), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 147/460 (31%), Positives = 236/460 (51%), Gaps = 11/460 (2%) Query: 3 VRYCRLLLAWILMLPVAACTLAPEQKHTELSMPSQWRAPHELAPGEGSGHTCWWAALGGT 62 R L LA ++ V+ C + + +P+ W E+AP WW G Sbjct: 7 FRRTHLALAVAVLFAVSGCAHNIDASKPNVEIPATW---AEVAPAGIELQRDWWRGFGSN 63 Query: 63 ELSDLLRRARAGNFELEAAKARVRQADALASAAGAPLLPELALQGYAERTRTASDPS--- 119 ELS L+ ++ AG+ +L A RV QA+ AS+AGA L P L + + + P+ Sbjct: 64 ELSALIDQSLAGSPDLIIAAERVTQAEITASSAGASLFPLLTVSAGTDTGQVKPGPTGSG 123 Query: 120 ---SNAHVLALAMNYELDLWGARQSASRSAQQQAAATAYLQEAMKISLDASVAQAYLQTV 176 S + +AL++NYE+D+WG + +RSA A+ Y E ++++L VA AY QT+ Sbjct: 124 WARSESTGVALSVNYEVDVWGRVAATTRSANASLNASRYDLETVRLTLTTGVANAYFQTL 183 Query: 177 ASRQRAALTRAAIENALQSLAAVNSQYRAGHVTATELTRRRRALLALQQQLVSHQRQAAA 236 A R + + + + A + + V ++YR G +A +++R+R +LA + ++ Q Q Sbjct: 184 ALRMQLQVAQENLAIAEKLFSIVEARYRFGAASALDVSRQRSTVLAQRATILPLQVQERQ 243 Query: 237 GLAALAALLGLPVQEVRVSLEGLDTLQVPTQQAALPPSLLLRRPDIVAMEHQLAAADADV 296 ++ALA LLG Q ++V+ LDTL +P LP +L+ RRPD+ ++E QL A A+V Sbjct: 244 TVSALAILLGRQPQALQVAALSLDTLAIPEVSPGLPSTLITRRPDVASVEAQLLAGSANV 303 Query: 297 TIARAALLPSLNLGASLGIGDERWRLPGHPVYE--LVAGLTMPIFNGGRLRAEREQRSAR 354 ARAALLP+++L S G G+P Y + A + +F+G LR E + Sbjct: 304 AAARAALLPTISLTGSAGNASAALLTLGNPAYSIGIAASIVQTLFDGNSLRLRVETNEST 363 Query: 355 RDEVLALYRAGIINALAEVESALQGLDASRSERRQQQQALAESSELVRLASSRHAAGFVD 414 R ++ YR + AL EV+ AL +R + + Q E+ + L+ R+ G D Sbjct: 364 RRQLAESYRRTVYTALKEVDDALGNATRNREQEQAQIAIKKEAERALALSELRYREGADD 423 Query: 415 VLALDDARAELYAISDVAVEKRLTELEAAVTLYKALGGEW 454 + +L DA+ L+A D + RL L ++KALGG W Sbjct: 424 LNSLLDAQRTLFAADDKLTQLRLLRLTGTTDVFKALGGGW 463 >gi|134095560|ref|YP_001100635.1| outer membrane transport protein involved toxic tolerance [Herminiimonas arsenicoxydans] Length = 476 Score = 154 bits (388), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 142/474 (29%), Positives = 222/474 (46%), Gaps = 34/474 (7%) Query: 10 LAWILMLPVAAC-TLAPEQKHTELSMPSQWRAPHELAPG-------------EGSGHTCW 55 LA + L V+ C L P+ + ++P+ W P A + + W Sbjct: 9 LALAITLAVSGCAMLEPQLPKADAAIPAAWPLPPNTAAAGQNVTADTSATKEQAAADIGW 68 Query: 56 WAALGGTELSDLLRRARAGNFELEAAKARVRQADALASAAGAPLLPELALQGYAERTRTA 115 +L +L+ RA N +L A V +A A A P AL G R R+ Sbjct: 69 RDFFVDPKLEELIARALHNNRDLRVAVLNVERARAQYQIQNAERFP--ALDGSVARNRSG 126 Query: 116 SD--PSSNAHVLALAMNYELDLWGARQSASRSAQQQAAATAYLQEAMKISLDASVAQAYL 173 + + + AL+ ++ELDL+G + S++A +Q A Q + ++SL A +A YL Sbjct: 127 GNVVNPGDYYSAALSASFELDLFGRIHNLSQAALEQYFAQEEGQRSAQLSLIAEIANTYL 186 Query: 174 QTVASRQRAALTRAAIENALQSLAAVNSQYRAGHVTATELTRRRRALLALQQQLVSHQRQ 233 A + + +A +N + V ++RAG V+ +L++ + + + + + Sbjct: 187 TFAADLESQRIAQATFDNQQIAYDLVVKRHRAGAVSGLDLSQAQTTIETARADVARYAGL 246 Query: 234 AAAGLAALAALLGLPVQEVRVSLEGLDTLQV------PTQQAALPPSLLLRRPDIVAMEH 287 A AL L+G PV++ + +G D L+V P Q LP +LLRRPD+ EH Sbjct: 247 VATDRNALTLLVGAPVEDSLLP-QGFD-LKVSGIAPLPAQ---LPSQVLLRRPDVRQTEH 301 Query: 288 QLAAADADVTIARAALLPSLNLGASLGIGDERWR---LPGHPVYELVAGLTMPIFNGGRL 344 L A+A++ ARAA PS++L S+G + G + V +++PIF+GG L Sbjct: 302 VLRGANANIGAARAAFFPSISLTGSVGSASNQLSGLFDSGTKFWSFVPQISLPIFHGGAL 361 Query: 345 RAEREQRSARRDEVLALYRAGIINALAEVESALQGLDASRSERRQQQQALAES-SELVRL 403 RA +A RD LA Y I + EV AL L ++ ++RRQ QQAL ++ S L Sbjct: 362 RANLGVATADRDIALARYEKAIQSGFREVADAL-ALTSTLAQRRQAQQALLDAASRAYDL 420 Query: 404 ASSRHAAGFVDVLALDDARAELYAISDVAVEKRLTELEAAVTLYKALGGEWRDG 457 + +R+ G L L DA+ Y V +L E VTLYK LGG W +G Sbjct: 421 SKARYQYGRDSFLILLDAQRTFYTAQQSLVAAQLAEQGNRVTLYKVLGGGWEEG 474 >gi|134095881|ref|YP_001100956.1| outer membrane transport protein involved in copper (silver) tolerance [Herminiimonas arsenicoxydans] Length = 474 Score = 129 bits (323), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 134/453 (29%), Positives = 212/453 (46%), Gaps = 24/453 (5%) Query: 18 VAACTLAPEQKHTELSMPSQWRAPHELAPGEGSGH-TCWWAALGGTELSDLLRRARAGNF 76 ++AC++AP+ + + + + A A + H T W L L+ A A N Sbjct: 15 LSACSMAPKYTRPDAPVAADYPAASAAADKQQRAHETGWRNFFPDQRLQALIGAALANNR 74 Query: 77 ELEAAKARVRQADALASAAGAPLLPELALQGYAERTRTAS-------DPSSNAHVLALAM 129 +L A R+ +A A + A LLP L R RT + D S+A+ + L++ Sbjct: 75 DLRVAALRIEEARAQYNIQSADLLPNLNGTFTGSRARTPASISPTGIDSVSSAYQVGLSL 134 Query: 130 -NYELDLWGARQSASRSAQQQAAATAYLQEAMKISLDASVAQAYLQTVASRQRAALTRAA 188 ++ELD +G S + +A AT Q A ISL A VA+AYL A ++ AL ++ Sbjct: 135 ASFELDFFGRVHSLNDAALASYLATEEAQRAAHISLVAEVAKAYLAERAFAEQLALAQST 194 Query: 189 IENALQSLAAVNSQYRAGHVTATELTRRRRALLALQQQLVSHQRQAAAGLAALAALLGLP 248 +++ + ++ G +A +L + L + + V+ RQ A L AL L+G P Sbjct: 195 LKSRGTAYDLAKQRFEVGASSALDLRQNEALLQSARVAQVTLARQRAQALNALTLLVGQP 254 Query: 249 V----QEVRVSLEGLDTLQVPTQQAALPPSLLLRRPDIVAMEHQLAAADADVTIARAALL 304 + + +S + + T +P A LP LL +RPDI + E L AA+A++ ARAA Sbjct: 255 LTGFPEAQPLSAQNIVT-DIP---AGLPSDLLTQRPDIRSAEQSLLAANANIGAARAAFF 310 Query: 305 PSLNLGASLGIGDERWRLP-----GHPVYELVAGLTMPIFNGGRLRAEREQRSARRDEVL 359 P ++L A GIG L G + L +PIF+ GR A R++ + Sbjct: 311 PRISLTA--GIGTASSTLSNLFDSGTRAWTFAPQLVLPIFDAGRNSANLTLSEVRKNIAI 368 Query: 360 ALYRAGIINALAEVESALQGLDASRSERRQQQQALAESSELVRLASSRHAAGFVDVLALD 419 A Y I +A EV AL D + Q++ +E ++LA R G L + Sbjct: 369 ANYEKSIQSAFREVSDALVARDLLEEQIDAQRRVQEAQAERLKLADQRFQNGIASSLDVL 428 Query: 420 DARAELYAISDVAVEKRLTELEAAVTLYKALGG 452 DA+ EL++ V+ RL L A+ LY++LGG Sbjct: 429 DAQRELFSAEQDLVQARLLRLTNAIDLYRSLGG 461 >gi|134095761|ref|YP_001100836.1| putative outer membrane transport protein involved in copper (silver) tolerance (cusC) [Herminiimonas arsenicoxydans] Length = 502 Score = 126 bits (317), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 143/428 (33%), Positives = 199/428 (46%), Gaps = 33/428 (7%) Query: 47 GEGSGHTCWWAALGGTELSDLLRRARAGNFELEAAKARVRQADALASAAGAPLLPELALQ 106 G + W L DL+ +A N +L AA RV +A A A P +A Q Sbjct: 58 GAAAAAMGWRDYFTDARLQDLIAQALENNRDLRAAVLRVEEARAAYGIQRAEQFPAIAAQ 117 Query: 107 GYAERTRTASD--------PSSNAHV-LALAMNYELDLWGARQSASRSAQQQAAATAYLQ 157 +ER +D SS HV L LA ++E+D WG +S +A + A+ + Sbjct: 118 AGSERAHVPADLSLTGKPAMSSQYHVSLGLA-SWEIDFWGRVRSLRDAALENYLASDEAR 176 Query: 158 EAMKISLDASVAQAYLQTVASRQRAALTRAAIENALQSLAAVNSQYRAGHVTATELTRRR 217 A+ ISL A VA +YL +R AL R I + +SL + G + LT+ + Sbjct: 177 RAVTISLVAQVANSYLALCELDERIALARLTIASREESLRIFTRRVEVGSTSRLNLTQVQ 236 Query: 218 RALLALQQQLVSHQRQAAAGLA-ALAALLGLPVQEVRVSLEGLDTLQV--PTQQAALPPS 274 LL+ Q L + QA A A AL L+G+ + E+ + LD Q+ P Q LP Sbjct: 237 -TLLSQAQALGAQLEQARALQANALILLVGVTL-ELPATSSRLDERQMLLPLQ-PGLPSD 293 Query: 275 LLLRRPDIVAMEHQLAAADADVTIARAALLPSLNLGASLGIGD---ERWRLPGHPVYELV 331 LL+RRPDIVA EHQL AA A + ARAA P + L S G + G + Sbjct: 294 LLIRRPDIVAAEHQLKAAHAQIGAARAAFFPRIALTGSFGTASAELDGLFAAGSRAWTFA 353 Query: 332 AGLTMPIFNGGRLRAEREQRSARRDEVLALYRAGIINALAEVESALQGLDASRSERRQQ- 390 +++P+F+ GR ARRD +A Y I A +V AL A+R QQ Sbjct: 354 PSISLPLFDAGRRSNNLSLAEARRDLAVANYEKTIQAAFRDVADAL----AARQWLAQQL 409 Query: 391 ---QQALAESSELVRLASSRH---AAGFVDVLALDDARAELYAISDVAVEKRLTELEAAV 444 Q AL +E RL+ R+ AA ++DVL DA+ +L V+ R L + V Sbjct: 410 LIAQAALTTQTERARLSQLRYDNGAAAYLDVL---DAQRDLLVAEQQLVQIRRALLSSQV 466 Query: 445 TLYKALGG 452 +LY ALGG Sbjct: 467 SLYAALGG 474 >gi|134095533|ref|YP_001100608.1| putative RND efflux system, outer membrane lipoprotein, NodT [Herminiimonas arsenicoxydans] Length = 499 Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 116/479 (24%), Positives = 197/479 (41%), Gaps = 36/479 (7%) Query: 6 CRLLLAWILMLPVAACTLAPEQKHTELSMPSQWRAPHEL---APGEGSG---HTC----- 54 CR L+ L+ ++ACT+ P+ + + + A G+ HT Sbjct: 8 CRYLIVVTLIQLISACTVGPDYIRQPPPTETAYTKKDPIVTTADNNGNAQRFHTDAAISA 67 Query: 55 -WWAALGGTELSDLLRRARAGNFELEAAKARVRQADALASAAGAPLLPELALQGYAERTR 113 WW +L + + R+ N L+AA+A ++++ A P++ G TR Sbjct: 68 DWWNLFHSADLGEAVDRSLRNNASLQAAQASLKESQHNLQAGYGVFFPQIG--GSFSATR 125 Query: 114 T--------ASDPSS--NAHVLALAMNYELDLWGARQSASRSAQQQAAATAYLQEAMKIS 163 ++ P N L A++Y LD++G + + QA Y+ A ++ Sbjct: 126 QLPSAFRFGSASPVGIFNLFTLGAAISYTLDIFGGERRMVEALGAQADYQKYVALATYLT 185 Query: 164 LDASVAQAYLQTVASRQRAALTRAAIENALQSLAAVNSQYRAGHVTATELTRRRRALLAL 223 L +V + A + T+ I + LA +Q A H A T L Sbjct: 186 LSGNVVNTAIARAAYHAQYEATQQLILRQQEQLAVAENQ--AAHGIAPYATVLSLRSLLA 243 Query: 224 QQQ----LVSHQRQAAAGLAALAALLGLPVQEVRVSLEGLDTLQVPTQ-QAALPPSLLLR 278 Q +V+ +R A L LA L G S L L++P LP L+ + Sbjct: 244 SSQAALAVVAQKRDQADHL--LANLQGTTASGTYTSSFDLAQLELPQDLPLTLPSELVRQ 301 Query: 279 RPDIVAMEHQLAAADADVTIARAALLPSLNLGASLGIGDERW---RLPGHPVYELVAGLT 335 RPD++A E QL A A V +A AAL PS +LGA+ +G+ + + + +G+ Sbjct: 302 RPDVLAAEAQLHVASAGVGVATAALFPSFSLGANYALGNTKLGNLSDSSSKFWSVGSGVD 361 Query: 336 MPIFNGGRLRAEREQRSARRDEVLALYRAGIINALAEVESALQGLDASRSERRQQQQALA 395 +PIF GG +R + LA YR +++A +V L ++ + Q ++L Sbjct: 362 VPIFQGGTAWHKRRAAQDAYQQALANYRQTVLSAFQQVADVLTAIEHDAQAVKAQAESLG 421 Query: 396 ESSELVRLASSRHAAGFVDVLALDDARAELYAISDVAVEKRLTELEAAVTLYKALGGEW 454 + + ++L + AG V L + A + Y ++ + L+ ALGG W Sbjct: 422 AAEQTLKLIEVNYRAGLVSYLDVLAANTQFYQSKIAYLQALGLRYQDTTALFVALGGGW 480 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.129 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 620,123 Number of extensions: 19521 Number of successful extensions: 138 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 118 Number of HSP's successfully gapped: 8 Length of query: 463 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 378 Effective length of database: 720,272 Effective search space: 272262816 Effective search space used: 272262816 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)