BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2236.p (391 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094168|ref|YP_001099243.1| putative secretion protein [Her... 229 1e-61 gi|134094772|ref|YP_001099847.1| hypothetical protein HEAR1556 [... 57 2e-09 gi|134094823|ref|YP_001099898.1| putative RND divalent metal cat... 55 7e-09 >gi|134094168|ref|YP_001099243.1| putative secretion protein [Herminiimonas arsenicoxydans] Length = 481 Score = 229 bits (585), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 130/312 (41%), Positives = 185/312 (59%), Gaps = 16/312 (5%) Query: 25 WWSLLRERETIETVLVNRGDLESSISAMGTLQARNYVDVGAQASGEIRRINVAAGSKVVQ 84 +++ RE + V RGD++ ++A GT+Q YVDVGAQ SG+++++++ GS V + Sbjct: 42 FYAKKDPREIYQVAEVQRGDIQDLVTATGTVQPLEYVDVGAQVSGQLKKLHIEVGSVVKE 101 Query: 85 GQLIAEIDPAAQQAKLDTDRANLENLRAQLLEQVANGDLAQQQLERQQRMQAEGSTREED 144 G L+AEIDP +A +D RA L N +A + E+ + LA Q RQ+ + A +T E Sbjct: 102 GDLLAEIDPTVFRATVDARRAGLRNQQATMKERESALALASLQYTRQKNLMAADATTAET 161 Query: 145 VQIAQNALRVAHARIASLRAQLAGAASTVQGSLVQLGYTRIFAPMNGTVVTLDARVGQTL 204 +QIA+ LR A A+I +L+AQ+ ST++ L Y +I+APM GTVV+L AR GQTL Sbjct: 162 LQIAEATLRAAKAQIDALQAQIEQTQSTLRADEANLNYAKIYAPMTGTVVSLTARQGQTL 221 Query: 205 NATYQTPRIMRIADLTTMTVWTQVSEADIRHVREGMPAWFSTLGDD-RRWRGQVRQILPA 263 NA P I+RIADL+TMTV TQVSEA+I + + M +F+TLG RRW G +R+I P Sbjct: 222 NANQNAPTILRIADLSTMTVQTQVSEAEIGKLSKNMEVYFTTLGSQGRRWYGALRKIEPT 281 Query: 264 PALAAGGELQDAGKAGATASKVVFYTVLLDVDNPDGTLRPQMSAQVHFIAQTVQGALLAP 323 P + + VV Y L DV N + L P M+ QV FIA T + LL P Sbjct: 282 PTV---------------TNNVVLYNALFDVPNNNQALMPNMTTQVFFIAATAKDVLLVP 326 Query: 324 LAALQAIPGSSA 335 +A+ GS + Sbjct: 327 TSAVTTTRGSGS 338 >gi|134094772|ref|YP_001099847.1| hypothetical protein HEAR1556 [Herminiimonas arsenicoxydans] Length = 497 Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/198 (27%), Positives = 94/198 (47%), Gaps = 28/198 (14%) Query: 182 YTRIFAPMNGTVVTLDARVGQTLNATYQTP--RIMRIADLTTMTVWTQVSEADIRHVREG 239 Y + +P+ G + L R G + TP I ++A L+ + + +V EA VR G Sbjct: 217 YFTLTSPVTGVITELSVRDGAMV-----TPGMTIAKVAGLSKVWLVAEVPEALSNAVRSG 271 Query: 240 MPAWFSTLGD-DRRWRGQVRQILPAPALAAGGELQDAGKAGATASKVVFYTVLLDVDNPD 298 M + GD +R++ G+VR+ILP + TA++ + L++DN D Sbjct: 272 MTVEATFSGDANRKYSGKVREILPGIS---------------TATRTL--QARLELDNRD 314 Query: 299 GTLRPQMSAQVHFIAQTVQGALLAPLAALQAIPGSSAQYRAQVLQADGRIAERQLRTGLN 358 G+L P M ++ A+ LL P A+ A + Q V A+ + + TG + Sbjct: 315 GSLTPGMLMRIRLDAEKPVSRLLVPSEAVIA---NGKQSIVLVAGANNSMQPVVVTTGRD 371 Query: 359 DRLQVEVLAGLAEGERLV 376 E+L+GL+EG+++V Sbjct: 372 SGNDTEILSGLSEGQKVV 389 >gi|134094823|ref|YP_001099898.1| putative RND divalent metal cation efflux membrane fusion protein (czcBlike) [Herminiimonas arsenicoxydans] Length = 404 Score = 54.7 bits (130), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 79/307 (25%), Positives = 127/307 (41%), Gaps = 40/307 (13%) Query: 68 SGEIRRINVAAGSKVVQGQLIAEIDPAAQQAKLDTDRANLENLRAQLLEQVANGDLAQQQ 127 SG ++ + G +V +GQ++A I L R++LL LA+ Sbjct: 112 SGVVQSVAADLGQQVKKGQVLAVIAST-----------GLSEQRSELLSAQKRMALARLT 160 Query: 128 LERQQRMQAEGSTREEDVQIAQNALRVAHARIASLRAQLA--GAASTVQGSLVQLGYTRI 185 ER++++ E + E+D AQ LR + + + +LA GA S G+ + I Sbjct: 161 FEREKKLWEEKISAEQDYLQAQQTLRESEIAVQNASQKLAALGAGSGSSGAFNRY---EI 217 Query: 186 FAPMNGTVVTLDARVGQTLNATYQTPRIMRIADLTTMTVWTQVSEADIRHVREGMPAWFS 245 AP +G VV +G+ A + I I+DL+++ VS D+ VR G Sbjct: 218 RAPFDGMVVAKHIALGE---AVKEDADIFTISDLSSVWAEIAVSAKDLNAVRVGEKVIVK 274 Query: 246 TLGDDRRWRGQVRQILPAPALAAGGELQDAGKAGATASKVVFYTVLLDVDNPDGTLRPQM 305 D G + + G L G+ TA T + + NP GT RP + Sbjct: 275 ASAFDSSASGTIAYV---------GSL--LGEQTRTA------TARVTLANPQGTWRPGL 317 Query: 306 SAQVHFIAQTVQGALLAPLAALQAIPGSSAQYRAQVLQADGRIAERQLRTGLNDRLQVEV 365 + +A + AL +I + V ADG IA+ Q+ TG +D VE+ Sbjct: 318 FVSIEIVAGETSVPVSVSAEALHSINDKPVVF---VKVADGFIAQ-QVTTGRSDGKSVEI 373 Query: 366 LAGLAEG 372 + G+ G Sbjct: 374 VKGMQAG 380 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.131 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 546,976 Number of extensions: 18555 Number of successful extensions: 107 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 106 Number of HSP's successfully gapped: 5 Length of query: 391 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 307 Effective length of database: 723,567 Effective search space: 222135069 Effective search space used: 222135069 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)