BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2233.p (567 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094288|ref|YP_001099363.1| putative ABC transporter permea... 94 1e-20 gi|134095531|ref|YP_001100606.1| ABC transporter ATP-binding pro... 85 7e-18 gi|134093728|ref|YP_001098803.1| lipid ABC transporter membrane/... 80 3e-16 gi|134096161|ref|YP_001101236.1| ABC transporter ATP-binding pro... 78 1e-15 gi|134095759|ref|YP_001100834.1| ribosome-associated ATPase [Her... 74 3e-14 >gi|134094288|ref|YP_001099363.1| putative ABC transporter permease [Herminiimonas arsenicoxydans] Length = 579 Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 141/578 (24%), Positives = 247/578 (42%), Gaps = 63/578 (10%) Query: 12 RELFLLLRPFSAWILLSAVTGIIAGMATVALLAMVNQVLA---------ATMKVNGEALL 62 R L L P+ L+ + I+A AT+A+ Q++ T +N L Sbjct: 2 RGLLKFLLPYKKQFALAGIALIVAAAATLAIPYAFRQMIDLGFGANGIHDTGSINTYFLA 61 Query: 63 IFVALCVAALIGRALSHIAMNRVGQDLVAQIRMRLAQKILSAPIDALERYRSYRLIPVLT 122 +F C+ AL A ++ ++ +G+ + A +R + +++ E +S ++ LT Sbjct: 62 LFGVACILALATAARFYM-VSWLGERVTADVRNAVYSHVVTQSPQFFETTQSGEVLSRLT 120 Query: 123 QDVDMISDMIFV-LATTLVSVVTVLGCLAFLAWLSLPLLGILVLALVLGGAIQVWAQVKG 181 D +I +I ++ L + + G L L S+ L I+++ L+ VW + Sbjct: 121 TDTTLIQTLIGTSISMALRNTLLFAGGLVMLFVTSIKLSSIILVMLIATVLPIVWFGRRV 180 Query: 182 VAGFWKARDHEEELHKAYRDISQGAKELR--MQRGRRSRMFRRRIEHTIK-AIRDVNSRA 238 + ++D + +I ++ S F + +E K A+R + +R+ Sbjct: 181 RSLSRASQDRVADSSALAGEILNAMPTVQAFTHEKIESERFSKTVEDAFKTAMRRIRARS 240 Query: 239 INIYVLAAAYGSALYFLLIALILGWAAFHPVDMAVLSG-----FVLILLFLKGPVEQIMG 293 + + A+ F+L W H V +SG F+L + G + + Sbjct: 241 LLTMIAILLIFGAIVFVL------WLGAHAVIDGTMSGGELGQFILYSAIVAGAIGALSE 294 Query: 294 VLPEVGRAKVAFQRIAEL--------SASFANPEPHLHLDGSAPPATLEEGIELREVRYA 345 V+ + RA A +R+ EL S + P P +GS+ + L V + Sbjct: 295 VVGDAQRAAGATERLLELLAVQSPISSPAVPLPLPPRRANGSS--------LALDLVSFY 346 Query: 346 FPSATGVEQPFT--LGPLNLALKRGELLFIVGDNGSGKTTLIKLLLGLYRPQQGSILLDG 403 +PS +P T + ++A+K GE + +VG +G+GKT+L +LLL Y PQ+G I LDG Sbjct: 347 YPS-----RPLTPAISNFSIAIKAGETVAVVGPSGAGKTSLFQLLLRFYDPQEGVIELDG 401 Query: 404 KPVTDEDRDDYRQLFTTVFADFHLFDELL--------PTAGEARSEQVAQ-AAAH-YLQR 453 + D R V D +F P A + VA+ AAAH ++ R Sbjct: 402 VDIRQLDLHALRNTIGIVPQDTVIFSANAMENIRYGRPDASDEEVIAVAKMAAAHEFIDR 461 Query: 454 LEIAHKVSIKDDAFTTLDLSTGQRKRLALVHAYLEGRPVLVFDEWAADQDPTFRHLFYTE 513 L ++ + + + LS GQR+R+A+ A L+ P+L+ DE + D L + Sbjct: 462 LPEGYQSFLGERG---VRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQSA 518 Query: 514 LLPELRELGHLVIAISHDDRYFHLADRVVRMAGGQIVE 551 L E +G + I+H A R++ M G IVE Sbjct: 519 L--EAAMVGRTTLVIAHRLATVQRAHRIIVMEHGHIVE 554 >gi|134095531|ref|YP_001100606.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 266 Score = 85.1 bits (209), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 98/195 (50%), Gaps = 17/195 (8%) Query: 368 GELLFIVGDNGSGKTTLIKLLLGLYRPQQGSILLDGKP---VTDEDRDDYR-QLFTTVFA 423 GE+LFIVG +GSGKTTL+ ++ G+ +P +GS+++ G+ ++ +D D+R VF Sbjct: 70 GEMLFIVGPSGSGKTTLLSIISGILKPNEGSVIVKGQDLWQLSKDDLADFRLNTIGFVFQ 129 Query: 424 DFHLFDELLPTAGEA-----RSEQVAQA---AAHYLQRLEIAHKVSIKDDAFTTLDLSTG 475 D+HLF L A + + A A YL + + +V I + LS G Sbjct: 130 DYHLFPRLTTAENVAIPLILKKNKWGDAITEAKKYLDIVGLKERVDI-----VPVKLSGG 184 Query: 476 QRKRLALVHAYLEGRPVLVFDEWAADQDPTFRHLFYTELLPELRELGHLVIAISHDDRYF 535 +++R+A+ A + +L+ DE A D + ++ ++ ++HD R F Sbjct: 185 EQQRVAIARAMVSHPSILILDEPTASLDGDTGRKILAFVHDQILNEKTCILIVTHDTRIF 244 Query: 536 HLADRVVRMAGGQIV 550 ADR++ M G+I Sbjct: 245 EFADRIMYMEDGKIT 259 >gi|134093728|ref|YP_001098803.1| lipid ABC transporter membrane/ATP-binding protein [Herminiimonas arsenicoxydans] Length = 581 Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 119/493 (24%), Positives = 209/493 (42%), Gaps = 53/493 (10%) Query: 85 VGQDLVAQIRMRLAQKILSAPIDALERYRSYRLIPVLTQDVDMISDMIFVLATTLV-SVV 143 V L++ +R ++ ++IL P+ + R+I + +V I +MI + T+++ + Sbjct: 86 VSSRLLSTLRKKMFERILDVPLGFYGTHSVGRVINSMMFEVQQIIEMITKVYTSIIRDSL 145 Query: 144 TVLGCLAFLAWLS--LPLLGILVLALVLGGAIQVWAQVKGVAGFWKARDHE-----EELH 196 TV+ LAFL WL+ L L+ +++L L+ +V+ + ++A + E EE Sbjct: 146 TVIVLLAFLFWLNWRLTLVALVLLPLIAIVVRFTGKRVRRLTREYQAVNAEMTQVIEEST 205 Query: 197 KAYRDIS-----QGAKELRMQRGRRSRMFRRRIEHTIKAIRDVNSRAINIYVLAAAYGSA 251 +A + I Q + R + R + R+ T+ A V + A+ A Sbjct: 206 RANQVIKIFGGHQYENDRFEVRADKLRSYTMRMASTLAATTPVTQ-------IMASCAVA 258 Query: 252 LYFLLIALILGWAAFHPVDMAVLSGFVLILLFLKGPVEQIMGVLPEVGRAKVAFQRIAEL 311 + ++IALI + + + F+ +L L P++ I V + + A + + L Sbjct: 259 I-VIVIALI--QSEQNQTTVGGFVSFITAMLMLLAPLKNIAEVNGPLQKGLTAAEAVFGL 315 Query: 312 SASFANPEPHLHLDGSAPPATLEEGIELREVRYAFPSATGVEQPFTLGPLNLALKRGELL 371 A PE G A ++ + +++P Q L +NL++ GE + Sbjct: 316 ID--AKPE---RTSGKTLEARAAGKLDFINLGFSYPG----HQSMALEDINLSVLPGETI 366 Query: 372 FIVGDNGSGKTTLIKLLLGLYRPQQGSILLDGKPVTDEDRDDYRQLFTTVFADFHLFDEL 431 VG +G GK+TL+ L+ G Y G I LD P+ + R+ V LFD+ Sbjct: 367 AFVGMSGGGKSTLVNLVPGFYPATVGEIRLDDVPIEEIALTSLRRQIAMVSQHVVLFDDT 426 Query: 432 LPTAGEARSEQVAQAAAHYLQRLEIAHKVSIKDDAFTTLD-------------LSTGQRK 478 + A A ++ A R+ A + DD L LS GQR+ Sbjct: 427 I-AANIAYGDETPDRA-----RILAAATAAHLDDVIAGLPQGLETMIGDNGSRLSGGQRQ 480 Query: 479 RLALVHAYLEGRPVLVFDEWAADQDPTFRHLFYTELLPELRELGHLVIAISHDDRYFHLA 538 RLA+ A + P+L+ DE + D L ++ G + I+H A Sbjct: 481 RLAIARAIYKDAPILILDEATSALDSESERAVQAALDALMK--GRTTLVIAHRLSTIERA 538 Query: 539 DRVVRMAGGQIVE 551 DR+ +A G+IVE Sbjct: 539 DRIAVLAEGRIVE 551 >gi|134096161|ref|YP_001101236.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 618 Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 112/237 (47%), Gaps = 19/237 (8%) Query: 327 SAPPATLEEGIELREVRYAFPSATGVEQPFTLGPLNLALKRGELLFIVGDNGSGKTTLIK 386 +AP + ++ V +A+ V F NL ++ GE + +VG +G+GK+T++ Sbjct: 350 AAPLQVMRGELKFDHVGFAYGGTRAVIDQF-----NLTIRPGEKVGLVGRSGAGKSTIVN 404 Query: 387 LLLGLYRPQQGSILLDGKPVTDEDRDDYRQLFTTVFADFHLF-----DELL---PTAGEA 438 LLL Y +QG IL+DG+ + ++ R V D L D +L P A EA Sbjct: 405 LLLRFYDLEQGRILIDGQDIAHVTQNSLRAQVGMVTQDTSLLHRSVRDNILYGRPDASEA 464 Query: 439 RSEQVAQ-AAAH-YLQRLEIAHKVSIKDDAFTT--LDLSTGQRKRLALVHAYLEGRPVLV 494 A+ A AH ++ L A + D + LS GQR+R+A+ L+ P+L+ Sbjct: 465 DMIDAAKRAEAHDFILTLSDAKGRTAYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILL 524 Query: 495 FDEWAADQDPTFRHLFYTELLPELRELGHLVIAISHDDRYFHLADRVVRMAGGQIVE 551 DE + D T L EL E G V+AI+H DR++ + G+IVE Sbjct: 525 LDEATSALDSEVEAAIQTSLY-ELME-GKTVVAIAHRLSTIAAMDRLIVLDKGRIVE 579 >gi|134095759|ref|YP_001100834.1| ribosome-associated ATPase [Herminiimonas arsenicoxydans] Length = 931 Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 108/243 (44%), Gaps = 22/243 (9%) Query: 331 ATLEEGIELREVRYAFPSATGVEQPFTLGPLNLALKRGELLFIVGDNGSGKTTLIKLLLG 390 A E IE R++ F T V+ +N ++RGE+ +G NG GKTT +K+L G Sbjct: 268 ADAEVAIEARDLTMRFGDFTAVDH------VNFRIRRGEIFGFIGSNGCGKTTTMKVLTG 321 Query: 391 LYRPQQGSILLDGKPVTDED-----RDDYRQLFTTVFADFHLFDELLPTAG--EARSEQV 443 L +G L G V D R Y +++++ + L+ A +V Sbjct: 322 LLAASEGRAWLFGHEVDPHDIATRRRVGYMSQSFSLYSELSVMQNLVLHARLFNVPEAEV 381 Query: 444 AQAAAHYLQRLEIAHKVSIKDDAFTTLDLSTGQRKRLALVHAYLEGRPVLVFDEWAADQD 503 A A L R + ++ DA L G R+RL+L A + G +L+ DE + D Sbjct: 382 AARAQQMLTRFGLEEEI----DALPN-KLPLGMRQRLSLAVAMVHGPELLILDEPTSGVD 436 Query: 504 PTFRHLFYTELLPELRELGHLVIAIS-HDDRYFHLADRVVRMAGGQI-VEDHPSTPQAAQ 561 P R F+ LL EL + I IS H DR+ M G++ V D P+ AQ Sbjct: 437 PVARDNFW-RLLIELSRRDRVTIFISTHFMNEAERCDRISLMHAGKVLVSDTPAQ-LVAQ 494 Query: 562 QQV 564 +QV Sbjct: 495 RQV 497 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.326 0.140 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 944,190 Number of extensions: 36127 Number of successful extensions: 273 Number of sequences better than 1.0e-08: 26 Number of HSP's gapped: 253 Number of HSP's successfully gapped: 26 Length of query: 567 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 480 Effective length of database: 713,682 Effective search space: 342567360 Effective search space used: 342567360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)