BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2230.p (490 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096527|ref|YP_001101602.1| diaminobutyrate--2-oxoglutarate... 260 9e-71 gi|134093412|ref|YP_001098487.1| ornithine aminotransferase [Her... 147 2e-36 gi|134094000|ref|YP_001099075.1| acetylornithine transaminase pr... 142 3e-35 gi|134093390|ref|YP_001098465.1| adenosylmethionine--8-amino-7-o... 116 2e-27 gi|134095606|ref|YP_001100681.1| beta alanine--pyruvate transami... 104 1e-23 >gi|134096527|ref|YP_001101602.1| diaminobutyrate--2-oxoglutarate aminotransferase [Herminiimonas arsenicoxydans] Length = 431 Score = 260 bits (665), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 156/430 (36%), Positives = 227/430 (52%), Gaps = 28/430 (6%) Query: 40 RQESNARSYPRRLPLVLKRGAGIYVEDIEGRVFIDCLAGAGTLALGHNHPAVIEAIVALL 99 R ES R Y R P V + + D G +ID LAGAGTL GHN+P + +A++ L Sbjct: 6 RLESEVRGYIRSFPTVFSKAQNAVLTDEGGNTYIDFLAGAGTLNYGHNNPVMKQAVIEYL 65 Query: 100 HDGAALHTLDLTTPVKDRFMQDL-LEILPPELSRQARVQFCGPTGADAIEAALKLVKSAT 158 + +H LD+ T K F+Q +L P S Q ++QF GPTG +A+EAA+KL ++ T Sbjct: 66 AEDGIVHGLDMATSAKKAFLQTFESHVLKPR-SMQYKLQFTGPTGTNAVEAAIKLARNVT 124 Query: 159 GGGTVLAFQGAYHGMTQGALQLMGSLAPKAPLNGILSGVQFLPYPYDYRCPLGLGGDAGV 218 G V++F +HG++ G+L L G+ + LS V PY + G+ D Sbjct: 125 GRQMVISFTNGFHGVSLGSLALTGNRKFRDAAGVSLSDVHRAPYSGYF----GMNIDT-- 178 Query: 219 RAGLHYIAATLNDPEGGVPKPAGVVVEAIQGEGGVIAAPPAWLAGLRQLTQSAEVPLILD 278 + + + DP GV PA ++VE +QGEGG+ A WL L QL + E+ LI+D Sbjct: 179 ---IAMLDKLIADPSSGVDLPAAIIVECVQGEGGLNVAGMNWLKKLEQLCKRHEILLIVD 235 Query: 279 EVQSGFGRSGKMFAFEHAGITPDVVVLSKAIGG-GLPLSVVVYKEQLDQWKPGAHAGTFR 337 ++Q+G GR+G F+FE AGI PD++ LSK++ G GLP+++++ K +LD WKPG H GTFR Sbjct: 236 DIQAGCGRTGTFFSFEPAGIKPDIITLSKSLSGFGLPMALLLMKPELDIWKPGQHNGTFR 295 Query: 338 GNQLAMAAGSATM-RVLRSEDLAGQARTKGQRLETALLALRQLHPHIGEV-RGRGLMLGV 395 GN +A +A + R + K +E L L +P RGRG+M G+ Sbjct: 296 GNNMAFVTATAALGHYWRDNKFQAAIQKKALTIEIFLDKLVASYPDAKLTRRGRGMMQGI 355 Query: 396 EIIDPQAPADVLGNPAAAPALARALQHECLRRGLILELGGRHGCVVRFLPPLVIGEDELE 455 D PALA + + GLI+E G VV+ L PL I ++ L Sbjct: 356 ACAD--------------PALADRISSIAFQNGLIIETSGGEDEVVKLLMPLTIEQETLL 401 Query: 456 RVIDIFAQAL 465 +DI A+ Sbjct: 402 AGLDILEHAV 411 >gi|134093412|ref|YP_001098487.1| ornithine aminotransferase [Herminiimonas arsenicoxydans] Length = 408 Score = 147 bits (370), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 126/428 (29%), Positives = 195/428 (45%), Gaps = 65/428 (15%) Query: 52 LPLVLKRGAGIYVEDIEGRVFIDCLAGAGTLALGHNHPAVIEAIVALLHDGA--ALHTLD 109 LP+VL +G GI++ D G+ ++D ++ ++ GH+HP + + AL H A+ + Sbjct: 20 LPVVLSKGKGIWLWDENGKRYMDMMSAYSAVSFGHSHP---DLVAALTHQAGRLAVTSRA 76 Query: 110 LTTPVKDRFMQDLLEI--LPPELSRQARVQFCGPTGADAIEAALKLVKSA--------TG 159 T F+Q L E+ +P L +G +A+E ALK + Sbjct: 77 FYTDQLGPFLQLLCEMTGMPQALPMN--------SGTEAVETALKAARKWGYKVKGIPDQ 128 Query: 160 GGTVLAFQGAYHGMTQGALQLMGSLAPKAPLNGILSGVQFLPYPYDYRCPLGLGGDAGVR 219 ++ G + G T + + G +P+ G A + Sbjct: 129 QAEIIVCHGNFAGRTTTIVGFSSEAQYRDGFGPFDGGFVTIPF----------GDAAALE 178 Query: 220 AGLHYIAATLNDPEGGVPKPAGVVVEAIQGEGGVIAAPPAWLAGLRQLTQSAEVPLILDE 279 A + P+ +VE IQGEGG+I P +LA R++ V LI DE Sbjct: 179 AAI-------------TPRTTAFLVEPIQGEGGIIVPPDGYLAQCREICTRHNVLLICDE 225 Query: 280 VQSGFGRSGKMFAFEHAGITPD-VVVLSKAIGGGLPLS-VVVYKEQLDQWKPGAHAGTFR 337 VQ+G GR+G++ A +H GI PD +++ GG LP+S + ++ + + PG H TF Sbjct: 226 VQTGLGRTGRLLACDHEGIKPDGLILGKALGGGLLPVSAFLARRDVMGVFTPGDHGSTFG 285 Query: 338 GNQLAMAAGSATMRVLRSEDLAGQARTKGQRLETALLALRQLHPHIGEVRGRGLMLGVEI 397 GN LA A G A + +L +L AR +GQ L L A+R HP I VRG+GL++G+E Sbjct: 286 GNPLAAAVGHAALSLLHDGELIAAARQRGQHLLDGLHAIR--HPAIRSVRGKGLLIGLE- 342 Query: 398 IDPQAPADVLGNPAAAPALARALQHECLRRGLILELGGRHGCVVRFLPPLVIGEDELERV 457 +DP A LAR+ + GL+ + H VVR PPLVI E++ Sbjct: 343 LDP------------AIILARSFCERLMENGLLSK--ETHYTVVRLAPPLVISAAEIDAA 388 Query: 458 IDIFAQAL 465 + I Sbjct: 389 LRIIEHVF 396 >gi|134094000|ref|YP_001099075.1| acetylornithine transaminase protein [Herminiimonas arsenicoxydans] Length = 400 Score = 142 bits (359), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 130/438 (29%), Positives = 202/438 (46%), Gaps = 67/438 (15%) Query: 44 NARSYPRRLP-LVLKRGAGIYVEDIEGRVFIDCLAGAGTLALGHNHPAVIEAIVALLHDG 102 NA Y P LV G G+++ D G+ ++D L G LGH+ P I+ D Sbjct: 9 NALLYITNRPELVFTEGDGMWLTDHNGKRYLDYLQGWAVNCLGHS-PKCIQ-------DA 60 Query: 103 AALHTLDLTTPVKDRFMQDLLEI--LPPELSRQARVQFCGPTGADAIEAALKLVK----- 155 A + L P + + + + L E S RV F +GA+A E+A+KL + Sbjct: 61 LAAQSKKLINPSPAFYNEPSIALAALLTENSCFDRVFFAN-SGAEANESAIKLARKWGKL 119 Query: 156 --SATGGG--TVLAFQGAYHGMTQGALQLMGSLAPKAPLNGILSGVQFLPYPYDYRCPLG 211 SA G ++ F ++HG T + G KA + I Y + P Sbjct: 120 NQSAAGENRYEIITFDHSFHGRTLATMSASG----KAGWDTI----------YAPQVP-- 163 Query: 212 LGGDAGVRAGLHYIAATLNDPEGG----VPKPAGVVVEAIQGEGGVIAAPPAWLAGLRQL 267 + ATLND K V++E +QGE GV+ A A++ LR L Sbjct: 164 -----------GFFKATLNDIASVEKLITGKTVAVMLEPVQGEAGVLPATRAFMQALRAL 212 Query: 268 TQSAEVPLILDEVQSGFGRSGKMFAFEHAGITPDVVVLSKAIGGGLPLSVVVYKEQLDQW 327 T+ + LI DEVQ+G GR G++FA++ +GI PD++ L K IGGG+PL+ ++ +E++ + Sbjct: 213 TKKHNILLITDEVQTGMGRCGELFAYQLSGIEPDIMTLGKGIGGGVPLAAMLCREEIACF 272 Query: 328 KPGAHAGTFRGNQLAMAAGSATMRVLRSEDLAGQARTKGQRLETALLALRQLHPHIGEVR 387 +PG GT+ GN L A G A + L + + KG+ L ALL L H GE R Sbjct: 273 EPGDQGGTYNGNPLMAAVGLAVAQALLAPGFMQSVKDKGEYLSKALLKLTAQHGLAGE-R 331 Query: 388 GRGLMLGVEIIDPQAPADVLGNPAAAPALARALQHECLRRGLILELGGRHGCVVRFLPPL 447 G GL+ +++ P V P GL+L ++RF+P L Sbjct: 332 GDGLLRALKLGSDIGPQIVEKARDMGPV------------GLLLN--SPRPDLLRFMPAL 377 Query: 448 VIGEDELERVIDIFAQAL 465 + +E++++I + + L Sbjct: 378 NVTIEEIDQMIAMLSDVL 395 >gi|134093390|ref|YP_001098465.1| adenosylmethionine--8-amino-7-oxononanoate transaminase [Herminiimonas arsenicoxydans] Length = 448 Score = 116 bits (291), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 119/460 (25%), Positives = 197/460 (42%), Gaps = 60/460 (13%) Query: 32 HPLLQRQARQESNARSYPRRLPLV-LKRGAGIYVEDIEGRVFIDCLAGAGTLALGHNHPA 90 HP Q Q + LPL+ + G G ++ DI G ++D ++ GH +P Sbjct: 21 HPCTQMQHHET---------LPLIPVSHGRGAWLYDINGDRYLDAISSWWVNLFGHANPR 71 Query: 91 VIEAIVALLHDGAALHTLDLTTPVKDRFMQDLLEILPPELS-RQARVQ---FCGPTGADA 146 + A+ L L + F + + L +L+ R V F GA A Sbjct: 72 INSAL--------KLQLDLLEHAMLAGFTHEPVVQLSEQLAARTGHVLGHCFYASDGASA 123 Query: 147 IEAALKL-VKSATGGGT-----VLAFQGAYHGMTQGALQLMGSLAPKAPLNGILSGVQFL 200 +E ALK+ + G + +G+YHG T GAL + + + +L + Sbjct: 124 VEIALKMSFHTWRNHGKPAKREFVCLKGSYHGETIGALGVTDVPIFRDAYDSLLQHAHVV 183 Query: 201 PYPYDYRCPLGLGGDAGVRAGLHYIAATLNDPEGGVPKPAGVVVE-AIQGEGGVIAAPPA 259 P G R + L + + A +++E +Q G+ P Sbjct: 184 ASPDARNAEPGESAADVARQAAGELEKLLQERASQI---AAIIIEPLVQCASGMAMHDPV 240 Query: 260 WLAGLRQLTQSAEVPLILDEVQSGFGRSGKMFAFEHAGITPDVVVLSKAIGGG-LPLSVV 318 +L +R L ++ +I DE+ G GR+G FA E A I PD + LSK I GG LPLS+V Sbjct: 241 YLQEVRLLCDKYQIHMIADEIAVGCGRTGTFFACEQAAIWPDFICLSKGISGGYLPLSLV 300 Query: 319 VYKEQ-------LDQWKPGAHAGTFRGNQLAMAAGSATMRVLRSEDLAGQARTKGQRLET 371 + +++ +D + H+ ++ GN LA A AT+ + +D+ R + +L Sbjct: 301 MTRDEIYQSFYDIDVRRGFLHSHSYTGNPLACRAALATLAIFEEDDVLNANRARAAQLTM 360 Query: 372 ALLALRQLHPHIGEVRGRGLMLGVE-IID-PQAPADVLGNPAAAPALARALQHECLRRGL 429 AL L H + R RG++ + +ID PQA A + + AL+HE L R + Sbjct: 361 ALAPLAS-HEQVANFRHRGMIWAFDAVIDSPQAAATF-----SQRFFSTALEHELLLRPI 414 Query: 430 ILELGGRHGCVVRFLPPLVIGEDEL----ERVIDIFAQAL 465 G V +PP ++ ++E+ RV +FA+ + Sbjct: 415 --------GNTVYLMPPYILSDEEIAGLAARVQTVFARVM 446 >gi|134095606|ref|YP_001100681.1| beta alanine--pyruvate transaminase [Herminiimonas arsenicoxydans] Length = 440 Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 120/438 (27%), Positives = 193/438 (44%), Gaps = 46/438 (10%) Query: 53 PLVLKRGAGIYVEDIEGRVFIDCLAGAGTLALGHNHPAVIEAIV--ALLHDGAALHTLDL 110 P +L +G+Y +GR +D AG + GH HP ++EA+ A D A L + Sbjct: 24 PRLLASASGMYYTTDDGRRILDGTAGLWCVNAGHGHPKIVEAVQQQAAQMDFAPL--FQI 81 Query: 111 TTPVKDRFMQDLLEILPPELSRQARVQFCGPTGADAIEAALKL------VKSATGGGTVL 164 P L I P ++R V FC G++ ++ ALK+ ++ G ++ Sbjct: 82 GHPKAFEAATALTGIAPDGMNR---VFFCN-DGSEGVDTALKIALAYHRMRGDAGRTRLI 137 Query: 165 AFQGAYHGMTQGALQLMGSLAPKAPLNGILSGVQFLPYPYD-----YRCPLGLGGDAGVR 219 + AYHG+ G + G + L+ V L +P + Y L L G A + Sbjct: 138 GRERAYHGVGFGGTAVGGIAGNRKQFGSGLTAVDHLRHPLNIEKNAYSRGLPLHG-AEMA 196 Query: 220 AGLHYIAATLNDPEGGVPKPAGVVVEAIQGEGGVIAAPPAWLAGLRQLTQSAEVPLILDE 279 L L+DP A V+VE +QG GVI P +L +R + + LI DE Sbjct: 197 DELEQRLLALHDPS----TVAAVIVEPLQGSTGVILPPKGYLEKIRAICDRYGILLIFDE 252 Query: 280 VQSGFGRSGKMFAFEHAGITPDVVVLSKAI-GGGLPLSVVVYKEQL-DQWKPGA------ 331 V +GFGR G FA + + PD++V +K + +P+ V+ ++Q+ D + A Sbjct: 253 VITGFGRLGSPFAADFFKVKPDMIVCAKGLTNAAVPMGAVIVRQQIHDVFMDAAPADTIE 312 Query: 332 --HAGTFRGNQLAMAAGSATMRVLRSEDLAGQARTKGQRLETALLALRQLHPHIGEVRGR 389 H T+ G+ LA AA AT+ V + E L +A E A +L+ L P + +VR Sbjct: 313 FFHGYTYSGHPLAAAAAIATLAVHKEEQLFQRAADMAPYFEDAAHSLKGL-PFVKDVRNL 371 Query: 390 GLMLGVEIIDPQAPADVLGNPAAAPALARALQHECLRRGLILELGGRHGCVVRFLPPLVI 449 GL+ G+E+ + G P A +GL+ +V PPL+I Sbjct: 372 GLVAGIEL------EGIRGKPGARA--YDLFNKAFWDKGLLTRTTAD---IVALSPPLII 420 Query: 450 GEDELERVIDIFAQALRV 467 + +++ + A L+ Sbjct: 421 SKMQIDEMFGSIADILKT 438 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.139 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 927,548 Number of extensions: 41225 Number of successful extensions: 154 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 138 Number of HSP's successfully gapped: 8 Length of query: 490 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 405 Effective length of database: 720,272 Effective search space: 291710160 Effective search space used: 291710160 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)