BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2227.p
         (812 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-de...   165   9e-42

>gi|134093326|ref|YP_001098401.1| putative outer membrane
           TonB-dependent receptor protein [Herminiimonas
           arsenicoxydans]
          Length = 716

 Score =  165 bits (417), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 191/730 (26%), Positives = 313/730 (42%), Gaps = 84/730 (11%)

Query: 120 LPQVVVKAAAENEENLPAAYAGGQVARGSRAGLLGNTNIMDTPFNTTSYTSTLMENQQAI 179
           LP+VVV + +E++           +AR +  G   +  + +TP + +  T   M+++   
Sbjct: 34  LPEVVVMSDSESD----------GIARNASVGGFSDAPLRETPASISVITHEQMQDRSIR 83

Query: 180 TVADVLANDPSVRTVSYGLTNSAAGGEVFMIRGLSVQ--DSILFDGVPGIMSGRAGSAEI 237
           +  D +  D SV+       N+    + F IRG ++    +   DG+  +++      E 
Sbjct: 84  SATDAVKYDASVQNA----YNAVGLADWFSIRGFTLDMGSNYRKDGMV-VLAHSMIPMEN 138

Query: 238 AERVELLKGPNALLNGMAPGAGGAVGGAINIVPKRADDEPLTRVTTTYMSNSNLAGHLDL 297
            ER E+LKG   L  GMA     + GG +N V KR  +EPL  VT        L G +DL
Sbjct: 139 KERFEVLKGLAGLQVGMA-----SSGGILNYVVKRPTNEPLRSVTLEASERGTLYGAVDL 193

Query: 298 GRRFGEDKQWGIRFNGSYRNGNTATAEQSVELGTAVLGLDYRGSQ---LRASLDLGHQTM 354
           G R  +DK++G R N +  +  +     + E        D+R S    L+  LD  H++ 
Sbjct: 194 GGR-SDDKRFGYRINAAGADIKSYVQGSNGERQFVSGAFDWRLSPKALLQIDLDYHHKSQ 252

Query: 355 NNNAPQGSAGFGI-GDGVEVPSPPSATARIA-QSWE-NTKSRSNFVLAKAEYDLSPQWMI 411
                    GF + G    +P+  SA   +  QSW       +N +  K EY+L+ QW  
Sbjct: 253 -----LSVPGFQLLGPAQRIPTGVSAKTMLNNQSWSLPVTDDTNNLGIKFEYELNEQWHT 307

Query: 412 YGAVGGSETQSRYLSTDITVNDSQG------------NGTANVYFWPNWSRNQVV---QG 456
                  E     L  D  V  + G            +GT N+Y     +  + V   Q 
Sbjct: 308 TLQANKFE-----LRRDDAVALASGCVAEGLSPGYCADGTFNMYDLRRDNDKRTVMSTQA 362

Query: 457 GLRGTVFTGSVKHRLNLSATYLKSDSGYTSSYYGFTSYDTNIYQPVTVAAPSLEGFSSNP 516
            L+G    G++KH L L  + +     Y +  + F S  T      ++  P     +  P
Sbjct: 363 MLQGKFNAGTIKHDLTLGMSTMNRRDNYAN--FLFESAGTG-----SIYYPKYNPLTLGP 415

Query: 517 PKTNSLQLP----SLALSDTLSFMDERIALTLGGRYQRVKSITYDTSGTGTGDTVYQKQA 572
               SL+      S+ + D L+ ++++  L  G RY +++   + +SG     T   K  
Sbjct: 416 TNPVSLRRKDEERSVFVQDVLT-LNDKFKLHAGMRYTQLQRTQFTSSGGLFRHT--DKDF 472

Query: 573 VTPVLAVVFKLMPNLSLYGNYIEGLIQGDTAPVGTTNAGQMFPPVKVKQREIGAKYDFG- 631
           + P +A+VF    N S+YG Y +GL  G   P G  N   +  P K +Q EIG K D   
Sbjct: 473 LLPNVALVFSPQSNWSIYGTYSQGLEPGAEVPSGLVNEETVLDPNKSRQVEIGIKADLSQ 532

Query: 632 SFGTSLSLFEIQRPSGFSVANADGTSTYQISGEQRNRGVELNLFGELARNARLLGGLAYT 691
               + +LF+I R + ++         Y  +G++ +RG+EL+  G   RN  L   +   
Sbjct: 533 DISVAAALFQIHRDNNYTSG-----LNYVTAGKEVHRGLELSAQGRATRNLTLGASMTTL 587

Query: 692 DARLTKTDSGTYDGNVAPNVSRWQLNLGGEYDVPALAGLTLSTRMISTSSQY------IE 745
            A    T     +G    NV   +  +  +Y +P +  L L+   I +SS+       I 
Sbjct: 588 QAFAENTGDARVEGKRIGNVPVLKSAVFMDYTLPQMPALKLNAMWIYSSSKVFAPNAQIS 647

Query: 746 QSNVRSIPGWTRWDVGARYTTRAFDKPMVLRASVNNVFNRNYWSSSS---GNWIYLGQPR 802
           + N + + G+   +VGA+Y T+        R  ++NVF++ YW  +S   G ++  G PR
Sbjct: 648 ELN-KKVDGYHVLNVGAQYKTKVSGTKTTFRFGIDNVFDKFYWGDASNAYGGYLIPGAPR 706

Query: 803 TVVLSASVDF 812
              LSA  DF
Sbjct: 707 VFRLSAQFDF 716


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.314    0.130    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,370,960
Number of extensions: 52277
Number of successful extensions: 145
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 3
Length of query: 812
Length of database: 1,000,347
Length adjustment: 89
Effective length of query: 723
Effective length of database: 707,092
Effective search space: 511227516
Effective search space used: 511227516
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 133 (55.8 bits)