BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2226.p
         (1369 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093504|ref|YP_001098579.1| long-chain-fatty-acid--CoA liga...    65   2e-11

>gi|134093504|ref|YP_001098579.1| long-chain-fatty-acid--CoA ligase
            [Herminiimonas arsenicoxydans]
          Length = 560

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 118/521 (22%), Positives = 206/521 (39%), Gaps = 67/521 (12%)

Query: 536  QHLSYGELEQRANQLAHHLLAHGAGPETRVGIAVERSLEMIVGLLAILKTGAAYVPLDMD 595
            + L+Y E++  + +L   L   G     RV + +   L+  V L A+L+ G   V ++  
Sbjct: 47   KFLTYAEVDTLSQKLGAWLQGTGLQKGARVALMMPNVLQYPVALAAVLRAGYVVVNVNPL 106

Query: 596  YPAERLAYIAADSG---------FAL----LITHSRLR---------------------- 620
            Y    L +   DSG         FA     +I  ++++                      
Sbjct: 107  YKPRELQHQLVDSGAEAIIILENFATTLEKIIVSTQIKHVVVATMGDMLGGLKGLLVNFV 166

Query: 621  ----QRLVPDRGV-QVIELDRLQLQALPVTPPMVALHPDNLAYVIYTSGSTGQPKGAAIG 675
                +++VP   + Q +    +  QA  +      L P ++A++ YT G+TG  KGA + 
Sbjct: 167  VRHVKKMVPAFSLPQAVSFKDVLAQAAHMHLQRPLLGPQDIAFLQYTGGTTGTAKGAMLT 226

Query: 676  H-GALAHCM---GWMQRRYALSAQDAVLHKAPFGFDVSVWEIFWPLTA----GTRL---V 724
            H   +A+ +    W+         D  L+   F   + ++ IF  LTA    GTRL    
Sbjct: 227  HRNIVANILQNEAWIWPVLRKEPPDKTLN---FVCALPLYHIF-ALTACCMLGTRLGVMN 282

Query: 725  LAAPGEQKDPERITELIRRHGITTLNFVPSMLQAFLSHDGIEQQTRLRYVICGGESMPAA 784
            +  P  +  P  + EL++ + I  L  V ++    L++    +       +C G  M A 
Sbjct: 283  ILIPNPRDIPSLVKELMK-YKINLLPAVNTLYNGLLNNPDFAKVDFSELKLCNGGGM-AV 340

Query: 785  TQA--EALRRLAGVSLQNLYGPTETTIHVSQWSCRDDGRSLVPIGRPIFATSAQVLDGAL 842
             Q   +  R + G S+   YG +ET+  V+  +  +       IG P+ +T   +LD   
Sbjct: 341  QQVVNDRWRVVTGCSIIEGYGLSETS-PVATSNPVETTEFSGTIGLPVPSTEVMILDSND 399

Query: 843  NPVPLGVAGELYIGGALLGRGYLGRAALTAERFVADPGDPDGGRLYRTGDLVRWNGQGQL 902
            N V LG++GE+ I G  +  GY    A TA+   AD         ++TGD+   + +G  
Sbjct: 400  NEVALGLSGEIAIRGPQVMAGYWNNPAETAQAMTAD-------GFFKTGDIGVMDARGYT 452

Query: 903  EYLGRIDHQVKIRGLRIELGEVEAQLLAQEALREAVVITQPAADGLRLVAYVSPRAGNMV 962
              + R    + + G  +   E+E  +     + E   I  P       V     R    +
Sbjct: 453  RIVDRKKDMILVSGFNVYPSEIENVVAGHPGVLECACIGVPDEHTGEAVKLFVVRRDPAL 512

Query: 963  TPTQIREQLGQRLPAYMVPDAVVVLPTLPLNANGKVDRKAL 1003
            T   +     ++   Y  P  +     LP +  GK+ R+ L
Sbjct: 513  TAEALMAFCKEQFTGYKKPKMIEFRTELPKSNVGKILRREL 553


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 2,564,480
Number of extensions: 106422
Number of successful extensions: 329
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 328
Number of HSP's successfully gapped: 1
Length of query: 1369
Length of database: 1,000,347
Length adjustment: 93
Effective length of query: 1276
Effective length of database: 693,912
Effective search space: 885431712
Effective search space used: 885431712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 135 (56.6 bits)