BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2224.p (1511 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095263|ref|YP_001100338.1| 3-oxoacyl-[acyl-carrier-protein... 100 7e-22 gi|134095266|ref|YP_001100341.1| malonyl-CoA-[acyl-carrier-prote... 96 1e-20 gi|134096036|ref|YP_001101111.1| 3-oxoacyl-(acyl carrier protein... 80 6e-16 >gi|134095263|ref|YP_001100338.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herminiimonas arsenicoxydans] Length = 413 Score = 100 bits (248), Expect = 7e-22, Method: Composition-based stats. Identities = 88/271 (32%), Positives = 132/271 (48%), Gaps = 18/271 (6%) Query: 174 LKGPAVAVQTACSTSLAAVHLACRGLLNHEADLALAGGVWLNLLQ-GRGYRYQAGAILS- 231 LKGP +AV TAC+T L ++ A R + +AD+ +AGG + G G A A+ S Sbjct: 156 LKGPNMAVVTACTTGLHSIGTAGRMIEYGDADVMIAGGAESTISPLGLGGFASARALSSR 215 Query: 232 ---PDGHCRPFDAQAGGTAIGSGAGLVVLKRLADARADGDTIHAVIRGSAMNNDGADKIG 288 P RP+D G +G GAG++VL+ A+A G I+A + G M+ D Sbjct: 216 NDDPTTASRPWDKDRDGFVLGEGAGVMVLEEYEHAKARGAKIYAELVGFGMSGDAYH--- 272 Query: 289 YTAPSIAGQAAVIMAAHAMAEVSPQSIGYVEAHGTATALGDPIEAAALMQAFGSASGEPF 348 TAP++ G + A AE++ + Y+ AHGT+T LGD E A+ AFG+ + + Sbjct: 273 ITAPNMDGPRRSMANALKSAEIAADQVQYLNAHGTSTPLGDKNETDAVKAAFGAHAKK-- 330 Query: 349 CALGSLKGNIGHLDAAAGVAGLIKTVQAIRQGILPPSLNFRQANAQITFSGSPFYVNTVT 408 + S K GHL AG + TV A+ I PP++N + + Y Sbjct: 331 LTVNSTKSMTGHLLGGAGGLESVFTVLALHHQISPPTINILNQDPECDLD----YCANTA 386 Query: 409 QPWPQQRWPRRAGVSSFGMGGTNVHVVLEQA 439 + P Q A ++FG GGTN ++ +A Sbjct: 387 REMPMQ----YAMKNNFGFGGTNGTLIFGKA 413 >gi|134095266|ref|YP_001100341.1| malonyl-CoA-[acyl-carrier-protein] transacylase [Herminiimonas arsenicoxydans] Length = 310 Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 89/306 (29%), Positives = 138/306 (45%), Gaps = 49/306 (16%) Query: 540 FLFPGQGAQHANMGRAAYADHPRVRQVVDHCCTLLQPHLGLDLRELLFPAPGTEAEAGQR 599 F+FPGQG+Q M +AD+ V+Q + LQ DL L+ P E Sbjct: 6 FVFPGQGSQAIGMLNG-FADNAVVQQTLAEASDALQ----FDLARLIAEGPKEE------ 54 Query: 600 LAQTALTQPALFVVEYALAQWWLEQGLRPDAML-GHSIGEYVAATLAGVFSLEDALTVIA 658 L T TQP + A+ + W+ G + A++ GHS+GEY A AGV +DA+ ++ Sbjct: 55 LDLTTNTQPVMLTAAVAMYRAWIAAGGKTPALVAGHSLGEYSALVAAGVIPFKDAVPLVR 114 Query: 659 ARGRLLQQT----EAGSMLSVPLSEACLREQALAGCDLAA---------VNGPELCVLAG 705 R + +Q+ + G + LS+A LA C AA N P V+AG Sbjct: 115 FRAKAMQEAVPVGQGGMAAILGLSDA----DVLAVCVEAAQGDVVEAVNFNAPAQVVIAG 170 Query: 706 SAQAIAQAKATLATRGVE-SRALQVSHAFHSARVEPMLAAFGELLGRVPLQAPQLPFVSN 764 AI +A +G + + L VS FHS+ ++P E + V PQ+P ++N Sbjct: 171 HKAAIERACELAKAKGAKRALVLPVSAPFHSSLLKPASDRLREYMAGVAFSVPQIPLINN 230 Query: 765 VSGTWITE---------QQARSPAYWVQHVRATVRFADGLALLAGQTARVWLEVGPGDTL 815 V +++ +QA +P WV+ V+ +A + + +E GPG L Sbjct: 231 VDVAVVSDVDSIKDALVRQAANPVRWVETVQK----------MAAEGVKDVVECGPGKVL 280 Query: 816 TTLTRR 821 LT+R Sbjct: 281 AGLTKR 286 >gi|134096036|ref|YP_001101111.1| 3-oxoacyl-(acyl carrier protein) synthase I [Herminiimonas arsenicoxydans] Length = 396 Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 78/265 (29%), Positives = 122/265 (46%), Gaps = 20/265 (7%) Query: 172 LDLKGPAVAVQTACSTSLAAVHLACRGLLNHEADLALAGGVWLNLLQGRGYRYQAGAILS 231 L L GPA+ V +ACS+S A R + D A+ GGV +L Y + + +L+ Sbjct: 148 LGLTGPALTVSSACSSSAKVFGNAARMIEAGLIDAAVVGGVD-SLCLTTLYGFNSLQLLA 206 Query: 232 PDGHCRPFDAQAGGTAIGSGAGLVVLKRLADARADGDTIHAVIRGSAMNNDGADKIGYTA 291 P +P+ G +I GA V+L + A A A G + + G ++D A + Sbjct: 207 PL-PAQPYGEGRNGISIAEGAAFVLLTKPASAPAAGTIL---LHGVGESSD-AHHMSSPH 261 Query: 292 PSIAGQAAVIMAAHAMAEVSPQSIGYVEAHGTATALGDPIEAAALMQAFGSASGEPFCAL 351 P G + AA A + + IGY+ HGTAT D E A+ FG+ + A Sbjct: 262 PEGLGAQMAMYAALQAAGIQAEQIGYINLHGTATPSNDAAEGKAVHAVFGNTT-----AC 316 Query: 352 GSLKGNIGHLDAAAGVAGLIKTVQAIRQGILPPSLNFRQANAQITFSGSPFYVNTVTQPW 411 S KG GH AAG I V A++ G++P +N ++ + + + ++ ++P Sbjct: 317 SSTKGATGHTLGAAGGVEAIICVMAMQHGVMPAGINTKKVDPGLDVD---YVLSNRSEPI 373 Query: 412 PQQRWPRRAGVSSFGMGGTNVHVVL 436 A +SFG GG+N +VL Sbjct: 374 ------HYAVNNSFGFGGSNCSLVL 392 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.134 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 2,813,191 Number of extensions: 116888 Number of successful extensions: 427 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 419 Number of HSP's successfully gapped: 5 Length of query: 1511 Length of database: 1,000,347 Length adjustment: 94 Effective length of query: 1417 Effective length of database: 690,617 Effective search space: 978604289 Effective search space used: 978604289 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 135 (56.6 bits)