BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2213.p
         (717 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-de...   120   2e-28

>gi|134093326|ref|YP_001098401.1| putative outer membrane
           TonB-dependent receptor protein [Herminiimonas
           arsenicoxydans]
          Length = 716

 Score =  120 bits (302), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 171/369 (46%), Gaps = 21/369 (5%)

Query: 363 RNTWTAETGLRGTTNTGPVKHKWSLTASTLSVTNGIALNDLGITAS--NIYTPVYFGQPS 420
           R   + +  L+G  N G +KH  +L  ST++  +  A N L  +A   +IY P Y   P 
Sbjct: 355 RTVMSTQAMLQGKFNAGTIKHDLTLGMSTMNRRDNYA-NFLFESAGTGSIYYPKY--NPL 411

Query: 421 IAGLRDSNSVHKTGATDLSGIALSDTLSILNDKLQWTIGVREQNVATKTYTEATGAMTGR 480
             G   +N V      +   + + D L+ LNDK +   G+R   +    +T ++G +   
Sbjct: 412 TLG--PTNPVSLRRKDEERSVFVQDVLT-LNDKFKLHAGMRYTQLQRTQFT-SSGGLFRH 467

Query: 481 YDKSKLTYATGLTVRPINNLSLYANYIEGLQAGVEVPSGYTNAGQVFAPYVSKQYEIGAK 540
            DK  L     L   P +N S+Y  Y +GL+ G EVPSG  N   V  P  S+Q EIG K
Sbjct: 468 TDKDFLLPNVALVFSPQSNWSIYGTYSQGLEPGAEVPSGLVNEETVLDPNKSRQVEIGIK 527

Query: 541 YDFGGFLTTLNA-YQLTTPNAQANGTLYTVDGEQRTKGVELNTYGSLTRDVRLLGGVAFT 599
            D    ++   A +Q+   N   +G  Y   G++  +G+EL+  G  TR++ L   +   
Sbjct: 528 ADLSQDISVAAALFQIHRDNNYTSGLNYVTAGKEVHRGLELSAQGRATRNLTLGASMTTL 587

Query: 600 DARQTNTVNGTNNGKKVQAAADVQANLGLEWDF--APGFTVSGRTIY-TGREYIDTANLQ 656
            A   NT +    GK++     +++ + +++     P   ++   IY + + +   A + 
Sbjct: 588 QAFAENTGDARVEGKRIGNVPVLKSAVFMDYTLPQMPALKLNAMWIYSSSKVFAPNAQIS 647

Query: 657 SIPSSVR----YDAGLRYMTTLAGHPTAFRFNVENLTNKSYWLGGN----GFVMQSRPRT 708
            +   V      + G +Y T ++G  T FRF ++N+ +K YW   +    G+++   PR 
Sbjct: 648 ELNKKVDGYHVLNVGAQYKTKVSGTKTTFRFGIDNVFDKFYWGDASNAYGGYLIPGAPRV 707

Query: 709 FTLSASVDL 717
           F LSA  D 
Sbjct: 708 FRLSAQFDF 716



 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 97/222 (43%), Gaps = 20/222 (9%)

Query: 36  TASGNLPWVVVTGDKVPTPDALPAPFSGGQVATGGRLGFLGNRDVLDTPFNTVSYTAQLI 95
           T+   LP VVV  D                +A    +G   +  + +TP +    T + +
Sbjct: 29  TSENVLPEVVVMSDS-----------ESDGIARNASVGGFSDAPLRETPASISVITHEQM 77

Query: 96  EDQQAKSVSDVLANNPSVRIYYPDNDGSTDFF-VRGNKVSQ-LDIAYDGLYGIGTPGI-- 151
           +D+  +S +D +  + SV+  Y +  G  D+F +RG  +    +   DG+  +    I  
Sbjct: 78  QDRSIRSATDAVKYDASVQNAY-NAVGLADWFSIRGFTLDMGSNYRKDGMVVLAHSMIPM 136

Query: 152 ESLERIDVLIGANALLNGLGPSGGVGAMINQVPKKALETPLTRLTFGWISDSQFGGAIDF 211
           E+ ER +VL G   L  G+  SGG+   +N V K+    PL  +T          GA+D 
Sbjct: 137 ENKERFEVLKGLAGLQVGMASSGGI---LNYVVKRPTNEPLRSVTLEASERGTLYGAVDL 193

Query: 212 SRRLGEDGQFGIRINAAYRDGDTAVNNQSRTVGTATVAMDWR 253
             R  +D +FG RINAA  D  + V   +      + A DWR
Sbjct: 194 GGR-SDDKRFGYRINAAGADIKSYVQGSNGERQFVSGAFDWR 234


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,362,065
Number of extensions: 56584
Number of successful extensions: 159
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 2
Length of query: 717
Length of database: 1,000,347
Length adjustment: 88
Effective length of query: 629
Effective length of database: 710,387
Effective search space: 446833423
Effective search space used: 446833423
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 132 (55.5 bits)