BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2202.p (683 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096458|ref|YP_001101533.1| putative exogenous ferric sider... 69 7e-13 gi|134094592|ref|YP_001099667.1| putative ferrisiderophore recep... 61 2e-10 gi|134094196|ref|YP_001099271.1| putative vitamin B12 receptor [... 59 7e-10 gi|134094194|ref|YP_001099269.1| putative vitamin B12 receptor [... 56 7e-09 >gi|134096458|ref|YP_001101533.1| putative exogenous ferric siderophore receptor; Iha adhesin precursor [Herminiimonas arsenicoxydans] Length = 737 Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 155/710 (21%), Positives = 274/710 (38%), Gaps = 128/710 (18%) Query: 24 AQESASQGAALPEVTVQASKQGKTEQKINGSISVVSGATLEQANVSRTDDLQRALPDL-- 81 AQ++A + L E+ V AS EQ+I + + ++ T E+ +R + + AL ++ Sbjct: 48 AQDAAPE-HQLKEIVVSASG---FEQEIKNAPASITVITREELQSNRVNSIAEALSNVEG 103 Query: 82 --YLPQQGNSAFITPSLRGVASLNTY--------NPAVVMYVDGVPQFVTAQSQLLTNVE 131 G + ++ +RG+ S T NPA + +G + + +E Sbjct: 104 VDVTSSVGKTGGLSIQMRGLGSAYTLILIDGRRQNPAGNVVPNGFGDSASTFMPPPSAIE 163 Query: 132 QVELLRGPQGSLFGRNAAAGVINIVTRQPDNELAG--------HVEGGFGNRGRRTTTAS 183 ++E++RGP +L+G +A GVINI+TR+ G H +G+ R + Sbjct: 164 RIEVIRGPMATLYGSDAIGGVINIITRKVGKTWGGTVTAETTMHEHSEYGD--SRAGSLY 221 Query: 184 ISGPLVKDSLYGEAVIA----YDSAD--------GFLRSLSSGQDNVGMHEDVAGQVKLR 231 +SGPLV D L G V A D++D G +L++G+D V + G +L Sbjct: 222 LSGPLV-DGLLGLQVRARKYKRDASDIQWPGKGSGDFPTLNTGRDPVSGDVNTVG-ARLS 279 Query: 232 YAPVGGP---LDVRFMASHECVRSAEDNYVSYTNFS--NRVILDGNSVPGLATMNSYMKR 286 + P LDV + + +SY + + NR+ +PG + + Sbjct: 280 FTPNKNHDLYLDVDQVKQKYDNSRGQIGTISYVDPTKGNRL-----QIPGYGPQQEFNR- 333 Query: 287 CIDNMSLSADYDFSDYRLSLVTARNKVDIRERLLGAQGK-----------SMP------E 329 D ++L+ + S+ L + NK + RL+ Q + +P E Sbjct: 334 --DQVTLAHTWRLSNSVLESSVSHNKTETLGRLIPGQLRPDGTVHTAPPGKIPGTPRVLE 391 Query: 330 SQESLSQEVRLATRGTGRAWDGVVGAYFEHGRYKQRSSYVLFPTFGTDSSQTTTDSAAVF 389 SQ ++ + + G G G Y + + G +S+ D +VF Sbjct: 392 SQSTIFDSKWVTSIGNNMLTLG--GQYLDAEMVE-----------GLATSKFKYDQTSVF 438 Query: 390 VDGTWHVTPRWDVSAGARLVQDKAETSGVLPIEGVAAYASSTSSNKALGKLSTGYQLTPS 449 + W + ++ G R D T G ++ G +S GY+ TP Sbjct: 439 AENEWRMRKDLALTVGVR--HDDHSTFGGATTPRAYLVWNANDYWTVKGGISKGYR-TPG 495 Query: 450 LRSYASLSQGYKPGGYNLQPTSANDSRSYRPETSLNYEMGLKFNTPDQK-VSARAAVFQI 508 L GY G +P N + +PE S + E+G +F+ D K A +F Sbjct: 496 LEQLFDGVVGYGRQGDPTRPQWGNP--NLKPEKSTSTELGFRFD--DLKGFGFNATIF-- 549 Query: 509 ESRNTQLYQGIVGSQYLT------------NAGQARSRGIEANLSAEVLRNWTLGLDAQV 556 NT L + +GSQ T N A RG+E + W L Sbjct: 550 ---NTDL-EDAIGSQTFTDINGNTNASRSINVDSASVRGVELGTIWQFAPAWKLN----- 600 Query: 557 VDSIFTDYHVNSSTDYTGNKLPFVPRYILAASLSGRIATDVGMVRPRVAARYIGQQQF-- 614 + FTD + + G L R++ ++ + ++G+ A ++F Sbjct: 601 ANYTFTDSEQKTGAN-KGQPLNNTSRHVFNTKVNWHYSQNLGL----WAQHSYNSERFRD 655 Query: 615 -DAANSLKQ------QGYMLVDGQVSWRATSKLDVSFYINNAFDKRYLNY 657 D A + + + Y +++ ++ ++ INN DK + Y Sbjct: 656 KDVAGTNTKALLGNYKAYHMLNLGADYKVNKSWTINMAINNLLDKDFAKY 705 >gi|134094592|ref|YP_001099667.1| putative ferrisiderophore receptor [Herminiimonas arsenicoxydans] Length = 725 Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 4/94 (4%) Query: 111 MYVDGVPQ----FVTAQSQLLTNVEQVELLRGPQGSLFGRNAAAGVINIVTRQPDNELAG 166 +Y+DG+ Q + +A +E++E+LRGP +G+ + GV+N+V+++P E G Sbjct: 147 VYIDGLRQANDYYTSAARPDPFTLERIEVLRGPAAMSYGQGSTGGVVNLVSKRPQAEFQG 206 Query: 167 HVEGGFGNRGRRTTTASISGPLVKDSLYGEAVIA 200 V GN GR+ A ++GPL +D + ++A Sbjct: 207 EVGVQLGNFGRKQLQADVTGPLTEDKQWLYRLVA 240 >gi|134094196|ref|YP_001099271.1| putative vitamin B12 receptor [Herminiimonas arsenicoxydans] Length = 622 Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 81/310 (26%), Positives = 138/310 (44%), Gaps = 41/310 (13%) Query: 7 ICLALTGAMTLYSPLGVAQESASQGAALPEVTVQASKQGKTEQKINGSISVVSGATLEQA 66 I L+++ A +SPL AQ ++ Q +L V V AS+ + + V++ ++Q+ Sbjct: 18 IVLSISAA---FSPLSFAQTASDQ--SLEPVVVTASRTVQKASDVLADNIVITAEEIQQS 72 Query: 67 NVSRTDDLQRALPDLYLPQQG---NSAFITPSLRGVASLNTYNPAVVMYVDGVPQF---- 119 + DL + + + + G NS+ + LRG S VV+ +DGV Sbjct: 73 GQTSLIDLLQKKRGVEITRNGGAGNSSSVF--LRGSNS-----KQVVLLIDGVRSVSSTL 125 Query: 120 --VTAQSQLLTNVEQVELLRGPQGSLFGRNAAAGVINIVTRQPDNELAGHVEGGFGNRGR 177 T + L+ +++VE++ GP S++G +A GVI + T++ G G G Sbjct: 126 GDATWSAIPLSQIDRVEIVFGPMSSMYGADAVGGVIQVFTKKGSGAPRISFSAGTGTYGE 185 Query: 178 RTTTASISGPLVKDSLYGEAVI------AYDSADGFLRSLSSGQ--DNVGMHE-DVAGQV 228 + +A +SG S+ GE I A++ ADGF + +GQ D G + ++GQ Sbjct: 186 QVVSAGVSG-----SVEGEHRIRYALNTAHEQADGFSSRVDAGQNPDKDGYRKRSMSGQF 240 Query: 229 KLRYAPVGGPLDVRFMASHECVRSAEDNYVSYTNFSNRVILDGNSVPGLATMNSYMKRCI 288 A G L + F+ S + DN +S N N +D V L + N + Sbjct: 241 SWELAH-GHELGLAFLNSRN--NAEYDNGLSTYNAHNIADVD---VYSLYSRNQLTENWS 294 Query: 289 DNMSLSADYD 298 + LS Y+ Sbjct: 295 SFLQLSRSYN 304 >gi|134094194|ref|YP_001099269.1| putative vitamin B12 receptor [Herminiimonas arsenicoxydans] Length = 651 Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 139/624 (22%), Positives = 250/624 (40%), Gaps = 96/624 (15%) Query: 5 KPICLALTGAMTLYSPLGVAQESASQGAALPEVTVQASKQGKTEQKINGSISVVSGATLE 64 KP LAL A+ + VAQ G L VTV AS+ E I + V++ + Sbjct: 14 KP--LALVSALATLTFPAVAQ--VETGQQLTPVTVSASRFESAEAPIGAT--VITAQQIR 67 Query: 65 QANVSRTDDLQRALPDLY-LPQQGNSAFITPSLRGVASLNTYNPAVVMYVDGV------- 116 + ++ R + ++ Q ++ + LRG S + N V ++VDG+ Sbjct: 68 DSGAGSINEAIRKIAGVFGRASQSGTSDSSLDLRGFGS--SSNQNVAIFVDGIRISENEL 125 Query: 117 -PQFVTAQSQLLTNVEQVELLRGPQGSLFGRNAAAGVINIVTRQPDNE-LAGHVEGGFGN 174 P ++A + + +VE++E++RG L+G A G I I+T++ + G V GN Sbjct: 126 QPAVMSAIA--IESVERIEVVRGGSSVLYGEGATGGTIQIITKRGSTKGTHGSVVAEIGN 183 Query: 175 RGRRTTTASISGPLVKDSLYGEAVIAYDSADGFLRSLSSGQDNVGMHEDVAGQVKLRYAP 234 RG AS++ G + D+ G LR+ + +N E+ +G V+ +A Sbjct: 184 RGHEEIRASLNA--------GWDGFSIDANLGALRTDNYRANNELRQENFSGGVQ--WAL 233 Query: 235 VGGPLDVRFMASHECVRSAEDNYVSYTNFSNRVILDGNSVPGLATMNSYMK------RCI 288 G + R ++ + +R +PG T++ Y++ + Sbjct: 234 QNGKVGFRVDSARQDLR----------------------LPGSLTLSQYLQNPRQTLKPT 271 Query: 289 DNMSLSADY--DFSDYRLSLVTARNKVDIRERLLGAQGKSMPESQESLSQEVR-----LA 341 +N SL +D F D R + + RE+ + ES ++ ++ Sbjct: 272 ENGSLDSDRYTFFVDQRYGNLELAADLSYREKTSKGDFSGFLSNAESEVKQFSPRAKYVS 331 Query: 342 TRGTGRAWDGVVGAYF-EHGRYKQRSSYVLFPTFGTDSSQTTTDSAAVFVDGTWHVTPRW 400 G+ R + +VG F + R+ Q S F T+ S A++ Sbjct: 332 NFGSTRN-ELIVGMDFSDSKRFTQSS----FNGAANADEHTSQQSMAIYGRNEIRF-GNM 385 Query: 401 DVSAGARLVQDKAETSGVLPIEGVAAYASSTSSNKALGKLSTGYQLTPSLRSYASLSQGY 460 V+AGAR +K + + +Y S S N L+ Y+LTP + + + Y Sbjct: 386 RVAAGAR--HEKFDQD----LRAGTSYNQSFSLNAF--DLNASYELTPLVSLFGKAGKSY 437 Query: 461 KPGGYNLQPTSANDSRSYRPETSLNYEMGLKFNTPDQKVSARAAVFQIESRNTQLYQGIV 520 + + +A S+ P+ S + E+G F + K+ A+ VF+ + ++ Y Sbjct: 438 RVANVD---ENAFLSKPLNPQRSNDLELGGLFGNDNNKLIAK--VFRHKLKDEIFYDPTA 492 Query: 521 GSQYLTNAGQARSR--GIEANLSAEVLRNWTLGLDAQVVDSIFTDYHVNSSTDYTGNKLP 578 G N R++ G+E A + + L Q V + FTD +G ++ Sbjct: 493 GGGVGANVNLDRTKRQGVEIEGRARLSSEFFLSAVLQHVSAKFTD------GPNSGKEMV 546 Query: 579 FVPRYILAASLSGRI---ATDVGM 599 VP+ L+ + DVG+ Sbjct: 547 LVPKNTATVRLNWKADKQTADVGV 570 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.315 0.131 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,209,278 Number of extensions: 47392 Number of successful extensions: 153 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 5 Length of query: 683 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 595 Effective length of database: 710,387 Effective search space: 422680265 Effective search space used: 422680265 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)