BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2200.p (614 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093728|ref|YP_001098803.1| lipid ABC transporter membrane/... 234 1e-62 gi|134096472|ref|YP_001101547.1| putative ABC transporter [Hermi... 224 8e-60 gi|134093506|ref|YP_001098581.1| ABC transporter ATP-binding pro... 221 9e-59 gi|134096161|ref|YP_001101236.1| ABC transporter ATP-binding pro... 209 4e-55 gi|134094288|ref|YP_001099363.1| putative ABC transporter permea... 194 1e-50 >gi|134093728|ref|YP_001098803.1| lipid ABC transporter membrane/ATP-binding protein [Herminiimonas arsenicoxydans] Length = 581 Score = 234 bits (596), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 159/498 (31%), Positives = 255/498 (51%), Gaps = 14/498 (2%) Query: 106 VSSHLMAADIQTELRGQLLSRLVNVPLGFFQDHSSQKIRQVVIDDVEQLEDGLAHLIPEL 165 VSS L++ LR ++ R+++VPLGF+ HS ++ ++ +V+Q+ + + + + Sbjct: 86 VSSRLLST-----LRKKMFERILDVPLGFYGTHSVGRVINSMMFEVQQIIEMITKVYTSI 140 Query: 166 TSHFIAPLIVIAALFAVDWRLSLASLSSLVLGMVACMLLMRKRHDIAQDFYLNQGKLFKA 225 + ++++A LF ++WRL+L +L L L + ++ + +++ ++ + Sbjct: 141 IRDSLTVIVLLAFLFWLNWRLTLVALVLLPLIAIVVRFTGKRVRRLTREYQAVNAEMTQV 200 Query: 226 MTEILRTMPAARLFNSGAAMQARVEEANGDYVGTAHRWVRGALLPNLVMQVLVSSPLLLL 285 + E R ++F R E R V Q++ S + ++ Sbjct: 201 IEESTRANQVIKIFGGHQYENDRFEVRADKLRSYTMRMASTLAATTPVTQIMASCAVAIV 260 Query: 286 LPLGLWWHQQGSLDLATLCFFVFFTPGLGNLLTKLAGFSNRFVQQQQAFEHLDILLG--- 342 + + L +Q T+ FV F + LL L + Q+ + + G Sbjct: 261 IVIALIQSEQNQ---TTVGGFVSFITAMLMLLAPLKNIAEVNGPLQKGLTAAEAVFGLID 317 Query: 343 -APEQSEGSHTSLPEKITIRCEQVSFSY--HQQAVLDNLSLTLHPGTTTALVGGSGSGKS 399 PE++ G + + FSY HQ L++++L++ PG T A VG SG GKS Sbjct: 318 AKPERTSGKTLEARAAGKLDFINLGFSYPGHQSMALEDINLSVLPGETIAFVGMSGGGKS 377 Query: 400 TLVKLLLRHWDVTSGRILLGERPINDYTRETLRQNITCIFQENQLFDMSIADNIRLGKPT 459 TLV L+ + T G I L + PI + +LR+ I + Q LFD +IA NI G T Sbjct: 378 TLVNLVPGFYPATVGEIRLDDVPIEEIALTSLRRQIAMVSQHVVLFDDTIAANIAYGDET 437 Query: 460 ATEEEVIQAARAAQAHEFIMALPQGYQTLLAPGSALLSGGEQQRLAIARAILKNAPILLL 519 ++ AA AA + I LPQG +T++ + LSGG++QRLAIARAI K+APIL+L Sbjct: 438 PDRARILAAATAAHLDDVIAGLPQGLETMIGDNGSRLSGGQRQRLAIARAIYKDAPILIL 497 Query: 520 DEATSQADALNEHRIQLALSALAADKTVLVIAHRLSSIAHADQIVVLEQGRVVEQGQHAA 579 DEATS D+ +E +Q AL AL +T LVIAHRLS+I AD+I VL +GR+VE G H Sbjct: 498 DEATSALDSESERAVQAALDALMKGRTTLVIAHRLSTIERADRIAVLAEGRIVELGSHQE 557 Query: 580 LLLQQGRYASLWQMQHAH 597 LL + YA+L+ +Q A Sbjct: 558 LLEKNAVYANLYHLQFAK 575 >gi|134096472|ref|YP_001101547.1| putative ABC transporter [Herminiimonas arsenicoxydans] Length = 726 Score = 224 bits (572), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 194/618 (31%), Positives = 308/618 (49%), Gaps = 33/618 (5%) Query: 3 ATPLTPSDAAPPEAASASAARAAPAPGAVSRLLALTRTRPGPLLIATLAGIAAAILSLTP 62 ATPL DA E + A P + + L L R P L G + S Sbjct: 106 ATPLAEPDARNEEEDADVDGVAEEQPPSTASLFRLWRF-AKPYRGQLLLGFLLTLGSTAA 164 Query: 63 NLVAYHFSLALLH---------ASLDQERLIALVGWLIG-GTLAGRLCFLASQVSSHLMA 112 LV + +L L+ +D ++ + L G LA L + + + + L++ Sbjct: 165 TLVPPYMTLPLMDNVLIPYQNGVEIDSSLVVLYLSGLFGSAVLAWGLGWARTYILA-LVS 223 Query: 113 ADIQTELRGQLLSRLVNVPLGFFQDHSSQKIRQVVIDDVEQLEDGLAHLIPELTSHFIAP 172 I +LR L+ + L +F + + + + +++ L+ + + + + Sbjct: 224 ERIGADLRTTTYEHLLRLSLEYFGGKRTGDLMTRIGSETDRICVFLSLHLLDFFTDVLMI 283 Query: 173 LIVIAALFAVDWRLSLASLSSLVLGMVACMLLMRKRHDIAQDFYLNQGKLFKAMTEIL-R 231 ++ A L +++ L+L +L L L +A M+ + + D ++ + +++ +T +L Sbjct: 284 IMTAAILISINPWLALVTL--LPLPFIAWMIHVVR--DKLRNGFEKIDRIWSQVTNVLAD 339 Query: 232 TMPAARLFNSGAAMQ---ARVEEANGDYVGTAHRWVRGALLPNLVMQVLVSSPLLLLLPL 288 T+P R+ + A + R EAN + R + L + + +L LL++ L Sbjct: 340 TIPGIRVVKAFAQEKREAVRFREANKHNLAINDRVNKVWSLFSPTVTLLTEIGLLVVWAL 399 Query: 289 GLWWHQQGSLDLATLCFFVFFTPGLGNLLTKLAGFSNRFVQQQQA-------FEHLDILL 341 G+W QG + + L F+ + + T+L S Q+A F+ LD + Sbjct: 400 GIWQVSQGLITVGVLTAFLAY---ITRFYTRLDSMSRIVSVTQKAATGAKRIFDILDHVS 456 Query: 342 GAPEQSEGSH-TSLPEKITIRCEQVSFSYHQQAVLDNLSLTLHPGTTTALVGGSGSGKST 400 PE + H T++ KITI+ + F Y +AV+ L L + PG LVG SGSGKST Sbjct: 457 SVPEATNPVHLTNVQGKITIK--NIGFRYGNRAVIRGLDLDIQPGEMIGLVGHSGSGKST 514 Query: 401 LVKLLLRHWDVTSGRILLGERPINDYTRETLRQNITCIFQENQLFDMSIADNIRLGKPTA 460 LV L+ R +DV+ G IL+ + R+NI + QE LF +IADNI GKP A Sbjct: 515 LVNLICRFYDVSDGAILVDGIDVRSIPIPEYRRNIGLVLQEPFLFFGTIADNIAYGKPDA 574 Query: 461 TEEEVIQAARAAQAHEFIMALPQGYQTLLAPGSALLSGGEQQRLAIARAILKNAPILLLD 520 + EE+I AARAA AHEFI+ LP GY +++ LSGGE+QR++IARA+L + IL+LD Sbjct: 575 SREEIIAAARAANAHEFILRLPHGYDSMVGERGQTLSGGERQRISIARALLIDPHILILD 634 Query: 521 EATSQADALNEHRIQLALSALAADKTVLVIAHRLSSIAHADQIVVLEQGRVVEQGQHAAL 580 EATS D E IQ AL L +T + IAHRLS++ AD+IVV+++G++VE G H L Sbjct: 635 EATSSVDTTTEREIQKALDNLVRGRTTIAIAHRLSTLRRADRIVVMDRGQIVEVGSHDEL 694 Query: 581 LLQQGRYASLWQMQHAHA 598 L ++G Y L+Q Q A Sbjct: 695 LAREGAYYKLYQAQQRQA 712 >gi|134093506|ref|YP_001098581.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 648 Score = 221 bits (563), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 115/250 (46%), Positives = 164/250 (65%), Gaps = 2/250 (0%) Query: 360 IRCEQVSFSYH-QQAVLDNLSLTLHPGTTTALVGGSGSGKSTLVKLLLRHWDVTSGRILL 418 ++ V FSY ++ +L ++ T+ GTTTA+VG SGSGKSTL +LL R +DV G IL+ Sbjct: 380 VKFSHVGFSYEAKRQILFDVDFTIAAGTTTAVVGHSGSGKSTLSRLLFRFYDVNEGAILI 439 Query: 419 GERPINDYTRETLRQNITCIFQENQLFDMSIADNIRLGKPTATEEEVIQAARAAQAHEFI 478 + + D T+ +LR I + Q+ LF+ +I NI GKP A++++++ AA++A H+FI Sbjct: 440 DGQDVRDVTQASLRNAIGIVPQDTVLFNDTIEYNIAYGKPGASKDDIVAAAKSAYIHDFI 499 Query: 479 MALPQGYQTLLAPGSALLSGGEQQRLAIARAILKNAPILLLDEATSQADALNEHRIQLAL 538 +LP GY T++ LSGGE+QR+AIAR +LK+ IL+ DEATS D+ E IQ L Sbjct: 500 ESLPDGYATMVGERGLKLSGGEKQRVAIARTLLKHPAILIFDEATSALDSKAEQAIQAQL 559 Query: 539 SALAADKTVLVIAHRLSSIAHADQIVVLEQGRVVEQGQHAALLLQQGRYASLWQMQHA-H 597 +A D+T +VIAHRLS+I A QI+VL+ GR+VE+G HA LL G YA +W Q A Sbjct: 560 KEIAKDRTTMVIAHRLSTIVDAAQILVLDHGRIVERGTHAQLLAADGAYAQMWARQQARQ 619 Query: 598 AVTPAQPTSE 607 +PA PT + Sbjct: 620 DESPASPTDD 629 >gi|134096161|ref|YP_001101236.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 618 Score = 209 bits (531), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 112/241 (46%), Positives = 156/241 (64%), Gaps = 6/241 (2%) Query: 360 IRCEQVSFSYH-QQAVLDNLSLTLHPGTTTALVGGSGSGKSTLVKLLLRHWDVTSGRILL 418 ++ + V F+Y +AV+D +LT+ PG LVG SG+GKST+V LLLR +D+ GRIL+ Sbjct: 360 LKFDHVGFAYGGTRAVIDQFNLTIRPGEKVGLVGRSGAGKSTIVNLLLRFYDLEQGRILI 419 Query: 419 GERPINDYTRETLRQNITCIFQENQLFDMSIADNIRLGKPTATEEEVIQAARAAQAHEFI 478 + I T+ +LR + + Q+ L S+ DNI G+P A+E ++I AA+ A+AH+FI Sbjct: 420 DGQDIAHVTQNSLRAQVGMVTQDTSLLHRSVRDNILYGRPDASEADMIDAAKRAEAHDFI 479 Query: 479 MALPQG-----YQTLLAPGSALLSGGEQQRLAIARAILKNAPILLLDEATSQADALNEHR 533 + L Y + LSGG++QR+AIAR +LK+APILLLDEATS D+ E Sbjct: 480 LTLSDAKGRTAYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEAA 539 Query: 534 IQLALSALAADKTVLVIAHRLSSIAHADQIVVLEQGRVVEQGQHAALLLQQGRYASLWQM 593 IQ +L L KTV+ IAHRLS+IA D+++VL++GR+VEQG H LL Q G YA LW Sbjct: 540 IQTSLYELMEGKTVVAIAHRLSTIAAMDRLIVLDKGRIVEQGSHRELLQQNGLYARLWAH 599 Query: 594 Q 594 Q Sbjct: 600 Q 600 >gi|134094288|ref|YP_001099363.1| putative ABC transporter permease [Herminiimonas arsenicoxydans] Length = 579 Score = 194 bits (493), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 148/421 (35%), Positives = 219/421 (52%), Gaps = 20/421 (4%) Query: 191 LSSLVLGMVACMLL--------MRKRHDIAQDFYLNQGKLFKAMTEILRTMPAARLFNSG 242 LSS++L M+ +L +R +QD + L EIL MP + F Sbjct: 158 LSSIILVMLIATVLPIVWFGRRVRSLSRASQDRVADSSAL---AGEILNAMPTVQAFTHE 214 Query: 243 AAMQARVEEANGDYVGTAHRWVRGALLPNLVMQVLVSSPLLLLLPLGLWWHQQGSLDLAT 302 R + D TA R +R L ++ +L+ ++ +L LG G++ Sbjct: 215 KIESERFSKTVEDAFKTAMRRIRARSLLTMIAILLIFGAIVFVLWLGAHAVIDGTMSGGE 274 Query: 303 LCFFVFFTPGLGNLLTKLAGFSNRFVQQQQAFEHLDILLG--APEQSEGSHTSLPEK--- 357 L F+ ++ + + L+ + A E L LL +P S LP + Sbjct: 275 LGQFILYSAIVAGAIGALSEVVGDAQRAAGATERLLELLAVQSPISSPAVPLPLPPRRAN 334 Query: 358 -ITIRCEQVSFSYHQQAV---LDNLSLTLHPGTTTALVGGSGSGKSTLVKLLLRHWDVTS 413 ++ + VSF Y + + + N S+ + G T A+VG SG+GK++L +LLLR +D Sbjct: 335 GSSLALDLVSFYYPSRPLTPAISNFSIAIKAGETVAVVGPSGAGKTSLFQLLLRFYDPQE 394 Query: 414 GRILLGERPINDYTRETLRQNITCIFQENQLFDMSIADNIRLGKPTATEEEVIQAARAAQ 473 G I L I LR I + Q+ +F + +NIR G+P A++EEVI A+ A Sbjct: 395 GVIELDGVDIRQLDLHALRNTIGIVPQDTVIFSANAMENIRYGRPDASDEEVIAVAKMAA 454 Query: 474 AHEFIMALPQGYQTLLAPGSALLSGGEQQRLAIARAILKNAPILLLDEATSQADALNEHR 533 AHEFI LP+GYQ+ L LSGG++QR+AIARA+LKN P+LLLDEATS DA +E Sbjct: 455 AHEFIDRLPEGYQSFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERL 514 Query: 534 IQLALSALAADKTVLVIAHRLSSIAHADQIVVLEQGRVVEQGQHAALLLQQGRYASLWQM 593 +Q AL A +T LVIAHRL+++ A +I+V+E G +VE G HA+L+ G YASL + Sbjct: 515 VQSALEAAMVGRTTLVIAHRLATVQRAHRIIVMEHGHIVETGTHASLVAAGGLYASLAAL 574 Query: 594 Q 594 Q Sbjct: 575 Q 575 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.134 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 960,513 Number of extensions: 34124 Number of successful extensions: 297 Number of sequences better than 1.0e-08: 40 Number of HSP's gapped: 260 Number of HSP's successfully gapped: 41 Length of query: 614 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 527 Effective length of database: 713,682 Effective search space: 376110414 Effective search space used: 376110414 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)