BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2199.p (589 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093506|ref|YP_001098581.1| ABC transporter ATP-binding pro... 216 2e-57 gi|134096472|ref|YP_001101547.1| putative ABC transporter [Hermi... 207 9e-55 gi|134094288|ref|YP_001099363.1| putative ABC transporter permea... 205 5e-54 gi|134093728|ref|YP_001098803.1| lipid ABC transporter membrane/... 194 7e-51 gi|134096161|ref|YP_001101236.1| ABC transporter ATP-binding pro... 191 1e-49 >gi|134093506|ref|YP_001098581.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 648 Score = 216 bits (550), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 126/352 (35%), Positives = 201/352 (57%), Gaps = 12/352 (3%) Query: 234 QHNQQLRQFYQRTSWKLAPGLLLANSLFGLVMAAALSFAGWRYLDGHLDGAQLLIVLALL 293 ++++ L++ Y+ + K L + N+ ++A A++ WR G + G L L L+ Sbjct: 265 RYDEGLKR-YETAAVKSQTSLSVLNTGQSSIIAVAVTLILWRATQGVISGTMTLGDLVLV 323 Query: 294 STLSQPIESLLAQRFQALASKEAMAAHAALLAHTALPDGHAEVAAGE---------AQIR 344 + I+ + F + +E + A + +L D H E+A A+++ Sbjct: 324 NAFM--IQLYIPLNFLGVIYREIKQSLADMERLFSLLDQHREIADKPNTQALVVQGAEVK 381 Query: 345 LEQVSFGYRPGEPVLHNLDLDFPAGKTTVIVGPSGAGKSTLLQLLARFHDTSSGRILVDG 404 V F Y +L ++D AG TT +VG SG+GKSTL +LL RF+D + G IL+DG Sbjct: 382 FSHVGFSYEAKRQILFDVDFTIAAGTTTAVVGHSGSGKSTLSRLLFRFYDVNEGAILIDG 441 Query: 405 QDIRAVALGDHLARISMVFQDGLLFQDSIASNIAAGARHATPEQLRAALRAAQCEAFVDA 464 QD+R V I +V QD +LF D+I NIA G A+ + + AA ++A F+++ Sbjct: 442 QDVRDVTQASLRNAIGIVPQDTVLFNDTIEYNIAYGKPGASKDDIVAAAKSAYIHDFIES 501 Query: 465 MPDGADTQLAELGRNLSGGQKQRLTIARALLKDAPIVLFDEMTSALDAENDHAIRCALRE 524 +PDG T + E G LSGG+KQR+ IAR LLK I++FDE TSALD++ + AI+ L+E Sbjct: 502 LPDGYATMVGERGLKLSGGEKQRVAIARTLLKHPAILIFDEATSALDSKAEQAIQAQLKE 561 Query: 525 LLPGRTTIMVAHRLDHAVAADQVVVMDQGKVIDCGSHAELLRRCTLYQQLWS 576 + RTT+++AHRL V A Q++V+D G++++ G+HA+LL Y Q+W+ Sbjct: 562 IAKDRTTMVIAHRLSTIVDAAQILVLDHGRIVERGTHAQLLAADGAYAQMWA 613 >gi|134096472|ref|YP_001101547.1| putative ABC transporter [Herminiimonas arsenicoxydans] Length = 726 Score = 207 bits (528), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 153/489 (31%), Positives = 258/489 (52%), Gaps = 13/489 (2%) Query: 96 RVTGQLRSSLVAHAMKVPLGLLARAFPSERLSRFIVHDLRWVEEFSSFGIAQQISNALLL 155 R+ LR++ H +++ L + ++R I + + F S + ++ L++ Sbjct: 225 RIGADLRTTTYEHLLRLSLEYFGGKRTGDLMTR-IGSETDRICVFLSLHLLDFFTDVLMI 283 Query: 156 TALIGALGWLDLTLALLVVVLLAVAVLVLEQIGRRMLASARQQQAQLEQVSRHLGELSAG 215 L ++ LAL+ ++ L ++ + ++ + QV+ L + G Sbjct: 284 IMTAAILISINPWLALVTLLPLPFIAWMIHVVRDKLRNGFEKIDRIWSQVTNVLADTIPG 343 Query: 216 LPVLRAYQDDARIKQRFTQHNQQLRQFYQRTS--WKL-APGLLLANSLFGLVMAAALSFA 272 + V++A+ + R RF + N+ R + W L +P + L + GL++ AL Sbjct: 344 IRVVKAFAQEKREAVRFREANKHNLAINDRVNKVWSLFSPTVTLLTEI-GLLVVWALGI- 401 Query: 273 GWRYLDGHLDGAQLLIVLALLSTLSQPIESLLAQRFQALASKEAMAAHAA--LLAH-TAL 329 W+ G + L LA ++ ++S+ R ++ K A A +L H +++ Sbjct: 402 -WQVSQGLITVGVLTAFLAYITRFYTRLDSM--SRIVSVTQKAATGAKRIFDILDHVSSV 458 Query: 330 PDGHAEVAAGEAQIRLEQVSFGYRPGE-PVLHNLDLDFPAGKTTVIVGPSGAGKSTLLQL 388 P+ V Q ++ + G+R G V+ LDLD G+ +VG SG+GKSTL+ L Sbjct: 459 PEATNPVHLTNVQGKITIKNIGFRYGNRAVIRGLDLDIQPGEMIGLVGHSGSGKSTLVNL 518 Query: 389 LARFHDTSSGRILVDGQDIRAVALGDHLARISMVFQDGLLFQDSIASNIAAGARHATPEQ 448 + RF+D S G ILVDG D+R++ + ++ I +V Q+ LF +IA NIA G A+ E+ Sbjct: 519 ICRFYDVSDGAILVDGIDVRSIPIPEYRRNIGLVLQEPFLFFGTIADNIAYGKPDASREE 578 Query: 449 LRAALRAAQCEAFVDAMPDGADTQLAELGRNLSGGQKQRLTIARALLKDAPIVLFDEMTS 508 + AA RAA F+ +P G D+ + E G+ LSGG++QR++IARALL D I++ DE TS Sbjct: 579 IIAAARAANAHEFILRLPHGYDSMVGERGQTLSGGERQRISIARALLIDPHILILDEATS 638 Query: 509 ALDAENDHAIRCALRELLPGRTTIMVAHRLDHAVAADQVVVMDQGKVIDCGSHAELLRRC 568 ++D + I+ AL L+ GRTTI +AHRL AD++VVMD+G++++ GSH ELL R Sbjct: 639 SVDTTTEREIQKALDNLVRGRTTIAIAHRLSTLRRADRIVVMDRGQIVEVGSHDELLARE 698 Query: 569 TLYQQLWSA 577 Y +L+ A Sbjct: 699 GAYYKLYQA 707 >gi|134094288|ref|YP_001099363.1| putative ABC transporter permease [Herminiimonas arsenicoxydans] Length = 579 Score = 205 bits (521), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 164/528 (31%), Positives = 267/528 (50%), Gaps = 33/528 (6%) Query: 66 YWTVLLACACPLLRLLMTSSAQTALFMEGYRVTGQLRSSLVAHAMKVPLGLLARAFPSER 125 Y+ L AC L L T++ + G RVT +R+++ +H + E Sbjct: 58 YFLALFGVACILA--LATAARFYMVSWLGERVTADVRNAVYSHVVTQSPQFFETTQSGEV 115 Query: 126 LSRFIVHDLRWVEEFSSFGIAQQISNALLLTALIGALGWLDLTLALLVVVLLAVAVLVLE 185 LSR + D ++ I+ + N LL + L + L+ +++V+L VL + Sbjct: 116 LSR-LTTDTTLIQTLIGTSISMALRNTLLFAGGLVMLFVTSIKLSSIILVMLIATVLPIV 174 Query: 186 QIGRRMLASARQQQAQLEQVSRHLGELSAGLPVLRAYQDDARIKQRFTQHNQQLRQFYQR 245 GRR+ + +R Q ++ S GE+ +P ++A+ + +RF++ + Sbjct: 175 WFGRRVRSLSRASQDRVADSSALAGEILNAMPTVQAFTHEKIESERFSKTVED------- 227 Query: 246 TSWKLAPGLLLANSLFGLV----MAAALSFAGW----RYLDGHLDGAQL-------LIVL 290 ++K A + A SL ++ + A+ F W +DG + G +L IV Sbjct: 228 -AFKTAMRRIRARSLLTMIAILLIFGAIVFVLWLGAHAVIDGTMSGGELGQFILYSAIVA 286 Query: 291 ALLSTLSQPIESLLAQRFQALASK--EAMAAHAALLAHTALPDGHAEVAAGEAQIRLEQV 348 + LS+ + AQR + E +A + + + A+P A + + L+ V Sbjct: 287 GAIGALSEVVGD--AQRAAGATERLLELLAVQSPI-SSPAVPLPLPPRRANGSSLALDLV 343 Query: 349 SFGY--RPGEPVLHNLDLDFPAGKTTVIVGPSGAGKSTLLQLLARFHDTSSGRILVDGQD 406 SF Y RP P + N + AG+T +VGPSGAGK++L QLL RF+D G I +DG D Sbjct: 344 SFYYPSRPLTPAISNFSIAIKAGETVAVVGPSGAGKTSLFQLLLRFYDPQEGVIELDGVD 403 Query: 407 IRAVALGDHLARISMVFQDGLLFQDSIASNIAAGARHATPEQLRAALRAAQCEAFVDAMP 466 IR + L I +V QD ++F + NI G A+ E++ A + A F+D +P Sbjct: 404 IRQLDLHALRNTIGIVPQDTVIFSANAMENIRYGRPDASDEEVIAVAKMAAAHEFIDRLP 463 Query: 467 DGADTQLAELGRNLSGGQKQRLTIARALLKDAPIVLFDEMTSALDAENDHAIRCALRELL 526 +G + L E G LSGGQ+QR+ IARALLK+ P++L DE TSALDAE++ ++ AL + Sbjct: 464 EGYQSFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQSALEAAM 523 Query: 527 PGRTTIMVAHRLDHAVAADQVVVMDQGKVIDCGSHAELLRRCTLYQQL 574 GRTT+++AHRL A +++VM+ G +++ G+HA L+ LY L Sbjct: 524 VGRTTLVIAHRLATVQRAHRIIVMEHGHIVETGTHASLVAAGGLYASL 571 >gi|134093728|ref|YP_001098803.1| lipid ABC transporter membrane/ATP-binding protein [Herminiimonas arsenicoxydans] Length = 581 Score = 194 bits (494), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 152/500 (30%), Positives = 260/500 (52%), Gaps = 39/500 (7%) Query: 96 RVTGQLRSSLVAHAMKVPLGLLARAFPSERLSRFIVHDLRWVEEFSSFGIAQQISNALLL 155 R+ LR + + VPLG R+ ++ +++ + E + I ++L + Sbjct: 89 RLLSTLRKKMFERILDVPLGFYG-THSVGRVINSMMFEVQQIIEMITKVYTSIIRDSLTV 147 Query: 156 TALIGALGWLDLTLALLVVVLLAVAVLVLEQIGRRMLASARQQQAQLEQVSRHLGELSAG 215 L+ L WL+ L L+ +VLL + +V+ G+R+ R+ QA ++++ + E + Sbjct: 148 IVLLAFLFWLNWRLTLVALVLLPLIAIVVRFTGKRVRRLTREYQAVNAEMTQVIEESTRA 207 Query: 216 LPVLRAYQDDARIKQRFTQHNQQLRQFYQRTSWKLAPGL----LLANSLFGLVMAAAL-- 269 V++ + RF +LR + R + LA ++A+ +V+ AL Sbjct: 208 NQVIKIFGGHQYENDRFEVRADKLRSYTMRMASTLAATTPVTQIMASCAVAIVIVIALIQ 267 Query: 270 SFAGWRYLDGHLDG-AQLLIVLALLSTLSQ---PIESLLAQRFQALASKEAMAAHAALLA 325 S + G + +L++LA L +++ P++ + L + EA+ Sbjct: 268 SEQNQTTVGGFVSFITAMLMLLAPLKNIAEVNGPLQ-------KGLTAAEAV-------- 312 Query: 326 HTALPDGHAEVAAGE-----AQIRLEQVSFGYR-PGEP--VLHNLDLDFPAGKTTVIVGP 377 L D E +G+ A +L+ ++ G+ PG L +++L G+T VG Sbjct: 313 -FGLIDAKPERTSGKTLEARAAGKLDFINLGFSYPGHQSMALEDINLSVLPGETIAFVGM 371 Query: 378 SGAGKSTLLQLLARFHDTSSGRILVDGQDIRAVALGDHLARISMVFQDGLLFQDSIASNI 437 SG GKSTL+ L+ F+ + G I +D I +AL +I+MV Q +LF D+IA+NI Sbjct: 372 SGGGKSTLVNLVPGFYPATVGEIRLDDVPIEEIALTSLRRQIAMVSQHVVLFDDTIAANI 431 Query: 438 AAGARHATPEQLR--AALRAAQCEAFVDAMPDGADTQLAELGRNLSGGQKQRLTIARALL 495 A G TP++ R AA AA + + +P G +T + + G LSGGQ+QRL IARA+ Sbjct: 432 AYG--DETPDRARILAAATAAHLDDVIAGLPQGLETMIGDNGSRLSGGQRQRLAIARAIY 489 Query: 496 KDAPIVLFDEMTSALDAENDHAIRCALRELLPGRTTIMVAHRLDHAVAADQVVVMDQGKV 555 KDAPI++ DE TSALD+E++ A++ AL L+ GRTT+++AHRL AD++ V+ +G++ Sbjct: 490 KDAPILILDEATSALDSESERAVQAALDALMKGRTTLVIAHRLSTIERADRIAVLAEGRI 549 Query: 556 IDCGSHAELLRRCTLYQQLW 575 ++ GSH ELL + +Y L+ Sbjct: 550 VELGSHQELLEKNAVYANLY 569 >gi|134096161|ref|YP_001101236.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 618 Score = 191 bits (484), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 101/246 (41%), Positives = 148/246 (60%), Gaps = 5/246 (2%) Query: 341 AQIRLEQVSFGYRPGEPVLHNLDLDFPAGKTTVIVGPSGAGKSTLLQLLARFHDTSSGRI 400 +++ + V F Y V+ +L G+ +VG SGAGKST++ LL RF+D GRI Sbjct: 358 GELKFDHVGFAYGGTRAVIDQFNLTIRPGEKVGLVGRSGAGKSTIVNLLLRFYDLEQGRI 417 Query: 401 LVDGQDIRAVALGDHLARISMVFQDGLLFQDSIASNIAAGARHATPEQLRAALRAAQCEA 460 L+DGQDI V A++ MV QD L S+ NI G A+ + A + A+ Sbjct: 418 LIDGQDIAHVTQNSLRAQVGMVTQDTSLLHRSVRDNILYGRPDASEADMIDAAKRAEAHD 477 Query: 461 FVDAMPDGA-----DTQLAELGRNLSGGQKQRLTIARALLKDAPIVLFDEMTSALDAEND 515 F+ + D D + E G LSGGQ+QR+ IAR +LKDAPI+L DE TSALD+E + Sbjct: 478 FILTLSDAKGRTAYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVE 537 Query: 516 HAIRCALRELLPGRTTIMVAHRLDHAVAADQVVVMDQGKVIDCGSHAELLRRCTLYQQLW 575 AI+ +L EL+ G+T + +AHRL A D+++V+D+G++++ GSH ELL++ LY +LW Sbjct: 538 AAIQTSLYELMEGKTVVAIAHRLSTIAAMDRLIVLDKGRIVEQGSHRELLQQNGLYARLW 597 Query: 576 SAWSQG 581 + S G Sbjct: 598 AHQSGG 603 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.324 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 945,864 Number of extensions: 33746 Number of successful extensions: 333 Number of sequences better than 1.0e-08: 40 Number of HSP's gapped: 300 Number of HSP's successfully gapped: 41 Length of query: 589 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 502 Effective length of database: 713,682 Effective search space: 358268364 Effective search space used: 358268364 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)