BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2197.p (746 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094592|ref|YP_001099667.1| putative ferrisiderophore recep... 391 e-110 gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-de... 152 5e-38 gi|134096547|ref|YP_001101622.1| catecholate siderophore recepto... 108 1e-24 gi|134096458|ref|YP_001101533.1| putative exogenous ferric sider... 64 3e-11 gi|134094194|ref|YP_001099269.1| putative vitamin B12 receptor [... 57 4e-09 >gi|134094592|ref|YP_001099667.1| putative ferrisiderophore receptor [Herminiimonas arsenicoxydans] Length = 725 Score = 391 bits (1005), Expect = e-110, Method: Compositional matrix adjust. Identities = 262/707 (37%), Positives = 380/707 (53%), Gaps = 60/707 (8%) Query: 52 SALPQVTVTAGQQEQATGPVHGFVAKRSATATKTDTPITEIPQSISVVTADQIAAQQARS 111 + LP V V+ G QE ATGPV G+ A RS+TATKTDT + E Q+++VVT DQI Q A + Sbjct: 55 TTLPAVNVS-GVQETATGPVIGYRATRSSTATKTDTSLAETLQAVTVVTRDQIVDQGATN 113 Query: 112 VSEALGYTSGVQVSTGAFAVVDTGSLLRGFALNNGGSFYRDGMLTASNASYSRYAPEPYG 171 + +AL Y +GV+ L+RG + + Y DG+ A++ S P+P+ Sbjct: 114 LQDALTYAAGVRSDAYGLDSRTDSVLVRGASPD----VYIDGLRQANDYYTSAARPDPFT 169 Query: 172 LERIELLHGPASVMFGQNSPGGLINVVSKKPTTSPLHELQVQVGSFDRKQVAGDFGGALD 231 LERIE+L GPA++ +GQ S GG++N+VSK+P E+ VQ+G+F RKQ+ D G L Sbjct: 170 LERIEVLRGPAAMSYGQGSTGGVVNLVSKRPQAEFQGEVGVQLGNFGRKQLQADVTGPLT 229 Query: 232 EAGVWSYRITGLARDAGTQVDGTVDRRVFLAPAITWHPSAATEWTGRFEYQRS-DGLANN 290 E W YR+ +AR+A TQVD D R +AP++TW P+ T T + YQR G + Sbjct: 230 EDKQWLYRLVAVARNADTQVDYVKDDRTLIAPSLTWKPNGVTSLTLQGLYQRDRTGSTSQ 289 Query: 291 LFPASGTVSANPNGQIPTSTAVGRSADNNEHYENWSLSSQFSHQFNEVWSFRQNLRY--- 347 P +G ++ N NG IPTS +G D + + SL F HQ N+ W+FRQN RY Sbjct: 290 FLPWAGMLTPNVNGMIPTSRFIGEPGDRYDT-DRQSLGYLFEHQLNDNWTFRQNFRYAVN 348 Query: 348 -TDY---NGERNSMRFAAFYPATQSATAALQRW--RLGTDSDT----FTTDNQLQADFST 397 DY + S + P + QR R DS T T D LQA T Sbjct: 349 EVDYFTHYADSFSTDPSTGLPGGWAIDPVNQRLIGRYADDSITKVKIATIDQHLQAKLQT 408 Query: 398 GAVKHKVLMGVDFHHTGGTVRGYVSPNTLAGYVLSNLYTTNYRTLPAVAENYNLRTVDDQ 457 G ++H +L G+D+ + +T+ ++Y Y + ++V Q Sbjct: 409 GPLQHDLLAGLDYTRYQRDRQSGFGMDTI------DVYAPVYGNGVVATLADDPQSVQRQ 462 Query: 458 LGVYLQDQLQIAERWFVSAGLRHDRSQQTVNNAIARTNSERSDRANTRNLGLVHELANGL 517 +G+YLQDQ++I + W VSAGLRHDR VNNA+A + E S RA T+ +G+++ L NG Sbjct: 463 IGLYLQDQIKIGKNWIVSAGLRHDR----VNNALAGSEDEES-RATTKRVGVMYLLENGW 517 Query: 518 SPYLSYTESFTPTTGTSFGGDMLKPERAKQYEAGLKYAPLNTNALFTLAVFDLRRQNVAT 577 SPY+SY+ESFTP GT+ KP R +Q E G+KY P+N ++ FT A++ + +N +T Sbjct: 518 SPYVSYSESFTPVAGTNAYDQRFKPVRGEQIEGGVKYMPVNGHSQFTAAIWKIDEKNKST 577 Query: 578 ADLLHAGYSLQTGAARSKGVELEGKVALTDGLSLTSSYSYTNAKVTSNTSTSSATSTEGK 637 D + +Q G +++GVELE K ++T + + + Y+YT+ + Sbjct: 578 TDPSNPLNQIQVGQTKNRGVELEWKASITPTIDVLAHYNYTDLD---------------E 622 Query: 638 ALPGAAKHNAGVLVDYGFQRGMLAGTHLSAGVRYIGRAYGNALNTFETPAVTLLDFGARL 697 L +H A + F G ++G L AG RY+ T TP+VTLLD Sbjct: 623 QLDEVPRHQAAAWGKWRFSIGGVSGFALGAGARYMSSFRDGVAPT--TPSVTLLDA---- 676 Query: 698 DLGRWNA-DWRNIELALKLNNVTDRVY-AFCSEY--CEYGARRTGLI 740 L W+ +WR AL +NN+TD+VY A C C YGARR+ ++ Sbjct: 677 -LLSWDTMNWR---YALNVNNLTDKVYNATCLSRGDCWYGARRSAVL 719 >gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-dependent receptor protein [Herminiimonas arsenicoxydans] Length = 716 Score = 152 bits (384), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 157/627 (25%), Positives = 270/627 (43%), Gaps = 59/627 (9%) Query: 49 TSDSALPQVTVTAGQQEQATGPVHGFVAKRSATATKTDTPITEIPQSISVVTADQIAAQQ 108 TS++ LP+V V + + +A+ ++ +D P+ E P SISV+T +Q+ + Sbjct: 29 TSENVLPEVVVMSDSESDG-------IARNASVGGFSDAPLRETPASISVITHEQMQDRS 81 Query: 109 ARSVSEALGYTSGVQVSTGAFAVVDTGSLLRGFALNNGGSFYRDGMLTASNASYSRYAPE 168 RS ++A+ Y + VQ + A + D S+ RGF L+ G ++ +DGM+ +++ E Sbjct: 82 IRSATDAVKYDASVQNAYNAVGLADWFSI-RGFTLDMGSNYRKDGMVVLAHSMIPMENKE 140 Query: 169 PYGLERIELLHGPASVMFGQNSPGGLINVVSKKPTTSPLHELQVQVGSFDRKQVAGDFGG 228 R E+L G A + G S GG++N V K+PT PL + ++ A D GG Sbjct: 141 -----RFEVLKGLAGLQVGMASSGGILNYVVKRPTNEPLRSVTLEASERGTLYGAVDLGG 195 Query: 229 ALDEAGVWSYRITGLARDAGTQVDGTVDRRVFLAPAITWHPSAATEWTGRFEYQRSDGLA 288 D+ + YRI D + V G+ R F++ A W S +Y L+ Sbjct: 196 RSDDKR-FGYRINAAGADIKSYVQGSNGERQFVSGAFDWRLSPKALLQIDLDYHHKSQLS 254 Query: 289 NNLFPASGTVSANPNGQIPTSTAVGRSADNNEHYENWSLSS---------QFSHQFNEVW 339 F G P +IPT G SA + ++WSL +F ++ NE W Sbjct: 255 VPGFQLLG-----PAQRIPT----GVSAKTMLNNQSWSLPVTDDTNNLGIKFEYELNEQW 305 Query: 340 -----SFRQNLRYTDYNGERNSMRFAAFYPATQSATAALQRWRLGTDSD---TFTTDNQL 391 + + LR D + P A + L D+D +T L Sbjct: 306 HTTLQANKFELRRDDAVALASGCVAEGLSPG-YCADGTFNMYDLRRDNDKRTVMSTQAML 364 Query: 392 QADFSTGAVKHKVLMGVDFHHTGGTVRGYVSPNTLAGYVLSNLYTTNYRTLPAVAEN-YN 450 Q F+ G +KH + +G+ + ++ + G ++Y Y L N + Sbjct: 365 QGKFNAGTIKHDLTLGMSTMNRRDNYANFLFESAGTG----SIYYPKYNPLTLGPTNPVS 420 Query: 451 LRTVDDQLGVYLQDQLQIAERWFVSAGLRHDRSQQTVNNAIARTNSERSDRANTRNLGLV 510 LR D++ V++QD L + +++ + AG+R+ + Q+T + N+ LV Sbjct: 421 LRRKDEERSVFVQDVLTLNDKFKLHAGMRYTQLQRTQFTSSGGLFRHTDKDFLLPNVALV 480 Query: 511 HELANGLSPYLSYTESFTP----TTGTSFGGDMLKPERAKQYEAGLKYAPLNTNALFTLA 566 + S Y +Y++ P +G +L P +++Q E G+K A L+ + A Sbjct: 481 FSPQSNWSIYGTYSQGLEPGAEVPSGLVNEETVLDPNKSRQVEIGIK-ADLSQDISVAAA 539 Query: 567 VFDLRRQNVATADLLHAGYSLQTGAARSKGVELEGKVALTDGLSLTSSYSYTNAKVTSNT 626 +F + R N T+ L + + G +G+EL + T L+L +S + A NT Sbjct: 540 LFQIHRDNNYTSGLNY----VTAGKEVHRGLELSAQGRATRNLTLGASMTTLQA-FAENT 594 Query: 627 STSSATSTEGKALPGAAKHNAGVLVDY 653 + EGK + + V +DY Sbjct: 595 GDA---RVEGKRIGNVPVLKSAVFMDY 618 >gi|134096547|ref|YP_001101622.1| catecholate siderophore receptor Fiu [Herminiimonas arsenicoxydans] Length = 759 Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 155/632 (24%), Positives = 251/632 (39%), Gaps = 78/632 (12%) Query: 54 LPQVTVTAGQQEQATGP---VHGFVAKRSA---TATKTDTPITEIPQSISVVTADQIAAQ 107 LP TV A QQ + P VHG A ++ K P+ Q+I+V+ + + Q Sbjct: 28 LPGTTVYA-QQVTSVLPEVEVHGTTESYKADTVSSPKFTQPLLNTTQTITVIKKELVQQQ 86 Query: 108 QARSVSEALGYTSGVQVSTGAFAVVDTGS-------LLRGFALNNGGSFYRDGMLTASNA 160 +++EAL T GV G F++ + G+ +RGF + S + DG+ Sbjct: 87 GGATLTEALRNTPGV----GTFSLGENGNTNTGDAIYMRGF--DTSSSIFVDGVRDL--G 138 Query: 161 SYSRYAPEPYGLERIELLHGPASVMFGQNSPGGLINVVSKKPTTSPLHELQVQVGSFDRK 220 S SR + + +E+IE+ GPA G+ SP G IN+ +K+PT + V VGS D K Sbjct: 139 SISR---DIFNIEQIEVTKGPAGADTGRGSPTGSINLSTKQPTMKEAYSGSVSVGSGDYK 195 Query: 221 QVAGDFGGALDEAGVWSYRITGLARDAGTQ-VDGTVDRRVFLAPAITWHPSAATEWTGRF 279 ++ D LD G ++RI L D+G D + R +A A + T + Sbjct: 196 RITADLNKPLDFDGGAAFRINLLKDDSGVAGRDIVKNDRQGIAAAFAFGLKTNTRTYLNY 255 Query: 280 EYQRSDGLANNLFPASG-------TVSANPNGQIPTSTAVGRSADNNEHYENWS------ 326 + + + P G +ANP P R N N S Sbjct: 256 LHVDQSNIPDGGVPTIGLPGYSSPVQAANPAATPPVVAIPARPFLNGASRVNSSNFYGTV 315 Query: 327 ----------LSSQFSHQFNEVWSFRQNLRYTDYNGERNSMRFAAFYPATQSATAA-LQR 375 L+++ H + + R+ + F P + A Sbjct: 316 GDFDDVTADMLTARVEHDISPDVKLQNTTRFGKTSQNYLLTGFMGSAPNLLTPNPADPTT 375 Query: 376 WRLGTDS-------DTFTTDNQLQADFSTGAVKHKVLMGVDFHHTGGTVRGYVSPNTLAG 428 W L S + F+ L A F TGAVKH ++ GV+ GY T++ Sbjct: 376 WTLARSSQMKDQTNEIFSNQTNLTAKFDTGAVKHSLVTGVELSSEKQRSLGYAGLGTISA 435 Query: 429 YVLSNLYTTN---YRT-LPAVAENYNLRTVDDQLGVYLQDQLQIAERWFVSAGLRHDRSQ 484 +NLY N RT V N + L VYL D L+++ +W ++ G+R D Sbjct: 436 ---ANLYNPNPYLVRTGYNPVGNGTNSEGRTNTLSVYLFDTLELSPQWQINGGVRVDHYD 492 Query: 485 QTVNNAIARTNSERSDRANTR---NLGLVHELANGLSPYLSYTESFTPTTGTSF------ 535 ++ + +++ T LG +++ S Y+SY S P G++F Sbjct: 493 TKYESSTLNVRNATLNKSGTLLNWKLGGLYKPTEDSSLYVSYATSKQPPGGSNFALSSNA 552 Query: 536 ---GGDMLKPERAKQYEAGLKYAPLNTNALFTLAVFDLRRQNVATADLLHAGYSLQTGAA 592 P+ + E G K+ L+ T A++ +N + G++ QTG Sbjct: 553 NSAANVNYDPQETRTAEIGAKWDLLDKRLGLTTAIYRTDVKNEIEGNATD-GFT-QTGKK 610 Query: 593 RSKGVELEGKVALTDGLSLTSSYSYTNAKVTS 624 R +GVEL +T +++ Y+ VT+ Sbjct: 611 RVEGVELGVVGEITSAWQVSAGYTRMRTDVTA 642 >gi|134096458|ref|YP_001101533.1| putative exogenous ferric siderophore receptor; Iha adhesin precursor [Herminiimonas arsenicoxydans] Length = 737 Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 80/161 (49%), Gaps = 18/161 (11%) Query: 54 LPQVTVTAGQ-QEQATGPVHGFVAKRSATATKTDTPITEIPQSISVVTADQIAAQQARSV 112 L + TAG Q P H + + +A+ + I P SI+V+T +++ + + S+ Sbjct: 36 LAVLAATAGSAHAQDAAPEHQ-LKEIVVSASGFEQEIKNAPASITVITREELQSNRVNSI 94 Query: 113 SEALGYTSGVQVS-----TGAFAVVDTG-------SLLRGFALNNGGSFYRDGMLTASNA 160 +EAL GV V+ TG ++ G L+ G N G+ +G Sbjct: 95 AEALSNVEGVDVTSSVGKTGGLSIQMRGLGSAYTLILIDGRRQNPAGNVVPNGF----GD 150 Query: 161 SYSRYAPEPYGLERIELLHGPASVMFGQNSPGGLINVVSKK 201 S S + P P +ERIE++ GP + ++G ++ GG+IN++++K Sbjct: 151 SASTFMPPPSAIERIEVIRGPMATLYGSDAIGGVINIITRK 191 >gi|134094194|ref|YP_001099269.1| putative vitamin B12 receptor [Herminiimonas arsenicoxydans] Length = 651 Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 17/137 (12%) Query: 87 TPIT---------EIPQSISVVTADQIAAQQARSVSEALGYTSGVQVSTGAFAVVDTGSL 137 TP+T E P +V+TA QI A S++EA+ +GV D+ Sbjct: 40 TPVTVSASRFESAEAPIGATVITAQQIRDSGAGSINEAIRKIAGVFGRASQSGTSDSSLD 99 Query: 138 LRGF--ALNNGGSFYRDGMLTASN----ASYSRYAPEPYGLERIELLHGPASVMFGQNSP 191 LRGF + N + + DG+ + N A S A E +ERIE++ G +SV++G+ + Sbjct: 100 LRGFGSSSNQNVAIFVDGIRISENELQPAVMSAIAIES--VERIEVVRGGSSVLYGEGAT 157 Query: 192 GGLINVVSKKPTTSPLH 208 GG I +++K+ +T H Sbjct: 158 GGTIQIITKRGSTKGTH 174 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.315 0.129 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,374,384 Number of extensions: 56531 Number of successful extensions: 197 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 182 Number of HSP's successfully gapped: 7 Length of query: 746 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 657 Effective length of database: 707,092 Effective search space: 464559444 Effective search space used: 464559444 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)