BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2194.p (817 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094592|ref|YP_001099667.1| putative ferrisiderophore recep... 314 1e-86 gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-de... 103 5e-23 gi|134096547|ref|YP_001101622.1| catecholate siderophore recepto... 94 3e-20 >gi|134094592|ref|YP_001099667.1| putative ferrisiderophore receptor [Herminiimonas arsenicoxydans] Length = 725 Score = 314 bits (804), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 238/690 (34%), Positives = 369/690 (53%), Gaps = 74/690 (10%) Query: 163 GYAASSSQTATRTATPLLEIPQSLSVVGRAEMEARGADSILDVLRYLPGANTETHGVDPR 222 GY A+ S TAT+T T L E Q+++VV R ++ +GA ++ D L Y G ++ +G+D R Sbjct: 75 GYRATRSSTATKTDTSLAETLQAVTVVTRDQIVDQGATNLQDALTYAAGVRSDAYGLDSR 134 Query: 223 GYDYFNLRGFINAQNTSNYLNGLRQMVSGF-GMFRTEAYGLERVEVLRGAASASFGQADP 281 D +RG + Y++GLRQ + R + + LER+EVLRG A+ S+GQ Sbjct: 135 T-DSVLVRG----ASPDVYIDGLRQANDYYTSAARPDPFTLERIEVLRGPAAMSYGQGST 189 Query: 282 GGVVNRISKLAGSDAPDEILASLGNFQRRQLAADLSGH-ADDGRLQGRIVGLALDSHTQF 340 GGVVN +SK ++ E+ LGNF R+QL AD++G +D + R+V +A ++ TQ Sbjct: 190 GGVVNLVSKRPQAEFQGEVGVQLGNFGRKQLQADVTGPLTEDKQWLYRLVAVARNADTQV 249 Query: 341 SYGNGRAVENDRLYLAPSLKLQLAPQTSLILLADYLQDRNGSGR----WTAV---RPDGS 393 Y V++DR +APSL + TSL L Y +DR GS W + +G Sbjct: 250 DY-----VKDDRTLIAPSLTWKPNGVTSLTLQGLYQRDRTGSTSQFLPWAGMLTPNVNGM 304 Query: 394 L-THTLVGDPGIDQQRGEQWSLGWQLEHRLDDQWRLQQDFRQAGLRSQY----------- 441 + T +G+PG D+ ++ SLG+ EH+L+D W +Q+FR A Y Sbjct: 305 IPTSRFIGEPG-DRYDTDRQSLGYLFEHQLNDNWTFRQNFRYAVNEVDYFTHYADSFSTD 363 Query: 442 -SVLNPGS-----LNGNLLARSSARYDTQLESSQLDTRLQGQWRQGALDHTLLLGLDLTR 495 S PG +N L+ R + T+++ + +D LQ + + G L H LL GLD TR Sbjct: 364 PSTGLPGGWAIDPVNQRLIGRYADDSITKVKIATIDQHLQAKLQTGPLQHDLLAGLDYTR 423 Query: 496 LRQREQRYRGDAPSLDLAQPVYGLPIAMASQLVAQLAEDMQ----QSGLYLQDQIRQGP- 550 QR+++ ++D+ PVYG + +VA LA+D Q Q GLYLQDQI+ G Sbjct: 424 Y-QRDRQSGFGMDTIDVYAPVYG------NGVVATLADDPQSVQRQIGLYLQDQIKIGKN 476 Query: 551 LVWTLGSRYDRVIDTNRNTLAQTRQDTRAHAWSHRLGVSWKLTPTLAPYLNYSTAFLPQP 610 + + G R+DRV N LA + +D + A + R+GV + L +PY++YS +F P Sbjct: 477 WIVSAGLRHDRV----NNALAGS-EDEESRATTKRVGVMYLLENGWSPYVSYSESFTPVA 531 Query: 611 GQDANGQPFAPTHARQLEAGLKFQPQQGRAIYTAALFQITKDHVLSNDPGHANFYVDQSQ 670 G +A Q F P Q+E G+K+ P G + +TAA+++I + + + DP + + Q Sbjct: 532 GTNAYDQRFKPVRGEQIEGGVKYMPVNGHSQFTAAIWKIDEKNKSTTDPSNPLNQIQVGQ 591 Query: 671 VRSRGLELEARGELWPGLNLLAAYSYTQALNIAQADPGLLGKSPVLVPRQAASLW--LDY 728 ++RG+ELE + + P +++LA Y+YT L + VPR A+ W + Sbjct: 592 TKNRGVELEWKASITPTIDVLAHYNYTD-----------LDEQLDEVPRHQAAAWGKWRF 640 Query: 729 TPGDAWPGLGLGGGARYSGASYANADNSVRNAATVLLDAMLRLDQGRWRYSLNVSNLANR 788 + G G LG GARY +S+ + + T LLDA+L D WRY+LNV+NL ++ Sbjct: 641 SIGGV-SGFALGAGARYM-SSFRDGVAPTTPSVT-LLDALLSWDTMNWRYALNVNNLTDK 697 Query: 789 -RNTSCLAEPTLTCFWAEERMAVLSARYRW 817 N +CL+ C++ R AVL+A Y++ Sbjct: 698 VYNATCLSRG--DCWYGARRSAVLTATYKF 725 >gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-dependent receptor protein [Herminiimonas arsenicoxydans] Length = 716 Score = 103 bits (256), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 149/609 (24%), Positives = 247/609 (40%), Gaps = 61/609 (10%) Query: 155 LVAGDDESGYAASSSQTATRTATPLLEIPQSLSVVGRAEMEARGADSILDVLRYLPGANT 214 +V D ES A ++ + PL E P S+SV+ +M+ R S D ++Y Sbjct: 38 VVMSDSESDGIARNASVGGFSDAPLRETPASISVITHEQMQDRSIRSATDAVKYDASVQN 97 Query: 215 ETHGVDPRGYDYFNLRGFINAQNTSNYLNGLRQMVSGFGMFRTEAYGLERVEVLRGAASA 274 + V D+F++RGF ++ +G+ +V M E ER EVL+G A Sbjct: 98 AYNAVGLA--DWFSIRGFTLDMGSNYRKDGM--VVLAHSMIPME--NKERFEVLKGLAGL 151 Query: 275 SFGQADPGGVVNRISKLAGSDAPDEILASLGNFQRRQL--AADLSGHADDGRLQGRI--V 330 G A GG++N + K ++ + +L +R L A DL G +DD R RI Sbjct: 152 QVGMASSGGILNYVVKRPTNEPLRSV--TLEASERGTLYGAVDLGGRSDDKRFGYRINAA 209 Query: 331 GLALDSHTQFSYGNGRAVENDRLYLAPSLKLQLAPQTSLILLADYLQDRNGS-------G 383 G + S+ Q S G +R +++ + +L+P+ L + DY S G Sbjct: 210 GADIKSYVQGSNG-------ERQFVSGAFDWRLSPKALLQIDLDYHHKSQLSVPGFQLLG 262 Query: 384 RWTAVRPDGSLTHTLVGD-----PGIDQQRGEQWSLGWQLEHRLDDQWRLQQDFRQAGLR 438 + P G T++ + P D +LG + E+ L++QW + LR Sbjct: 263 PAQRI-PTGVSAKTMLNNQSWSLPVTDDTN----NLGIKFEYELNEQWHTTLQANKFELR 317 Query: 439 SQYSV----------LNPGSLNGNLLARSSARYDTQLESSQLDTR--LQGQWRQGALDHT 486 +V L+PG R D + + + T+ LQG++ G + H Sbjct: 318 RDDAVALASGCVAEGLSPGYCADGTFNMYDLRRDND-KRTVMSTQAMLQGKFNAGTIKHD 376 Query: 487 LLLGLDLTRLRQREQRYRGD-APSLDLAQPVYGLPIAMASQLVAQLAEDMQQSGLYLQDQ 545 L LG+ R + + A + + P Y P+ + L ++ +++QD Sbjct: 377 LTLGMSTMNRRDNYANFLFESAGTGSIYYPKYN-PLTLGPTNPVSLRRKDEERSVFVQDV 435 Query: 546 IR-QGPLVWTLGSRYDRVIDTNRNTLAQTRQDTRAHAWSHRLGVSWKLTPTLAPYLNYST 604 + G RY ++ T + + T + + + + Y YS Sbjct: 436 LTLNDKFKLHAGMRYTQLQRTQFTSSGGLFRHTDKDFLLPNVALVFSPQSNWSIYGTYSQ 495 Query: 605 AFLP---QPGQDANGQP-FAPTHARQLEAGLKFQPQQGRAIYTAALFQITKDHVLSNDPG 660 P P N + P +RQ+E G+K Q ++ AALFQI +D N+ Sbjct: 496 GLEPGAEVPSGLVNEETVLDPNKSRQVEIGIKADLSQDISV-AAALFQIHRD----NNYT 550 Query: 661 HANFYVDQSQVRSRGLELEARGELWPGLNLLAAYSYTQALNIAQADPGLLGKSPVLVPRQ 720 YV + RGLEL A+G L L A+ + QA D + GK VP Sbjct: 551 SGLNYVTAGKEVHRGLELSAQGRATRNLTLGASMTTLQAFAENTGDARVEGKRIGNVPVL 610 Query: 721 AASLWLDYT 729 +++++DYT Sbjct: 611 KSAVFMDYT 619 >gi|134096547|ref|YP_001101622.1| catecholate siderophore receptor Fiu [Herminiimonas arsenicoxydans] Length = 759 Score = 94.0 bits (232), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 172/722 (23%), Positives = 283/722 (39%), Gaps = 111/722 (15%) Query: 178 PLLEIPQSLSVVGRAEMEARGADSILDVLRYLPGANTETHGVD--PRGYDYFNLRGFINA 235 PLL Q+++V+ + ++ +G ++ + LR PG T + G + D +RGF Sbjct: 67 PLLNTTQTITVIKKELVQQQGGATLTEALRNTPGVGTFSLGENGNTNTGDAIYMRGF--D 124 Query: 236 QNTSNYLNGLRQMVSGFGMFRTEAYGLERVEVLRGAASASFGQADPGGVVNRISKLAGSD 295 ++S +++G+R + G + + +E++EV +G A A G+ P G +N +K Sbjct: 125 TSSSIFVDGVRDL----GSISRDIFNIEQIEVTKGPAGADTGRGSPTGSINLSTKQPTMK 180 Query: 296 APDEILASLGNFQRRQLAADLSGHAD-DGRLQGRIVGLALDSHTQFSYGNGR-AVENDRL 353 S+G+ +++ ADL+ D DG RI L DS GR V+NDR Sbjct: 181 EAYSGSVSVGSGDYKRITADLNKPLDFDGGAAFRINLLKDDSGVA-----GRDIVKNDRQ 235 Query: 354 YLAPSLKLQLAPQTSLILLADYLQDRN--GSGRWT------------------------- 386 +A + L T L ++ N G T Sbjct: 236 GIAAAFAFGLKTNTRTYLNYLHVDQSNIPDGGVPTIGLPGYSSPVQAANPAATPPVVAIP 295 Query: 387 -------AVRPDGSLTHTLVGDPGIDQQRGEQWSLGWQLEHRLDDQWRLQQDFRQAGLRS 439 A R + S + VGD D + L ++EH + +LQ R G S Sbjct: 296 ARPFLNGASRVNSSNFYGTVGD--FDDVTADM--LTARVEHDISPDVKLQNTTR-FGKTS 350 Query: 440 QYSVL-------------NPGSLNGNLLARSSARYDTQLESSQLDTRLQGQWRQGALDHT 486 Q +L NP LARSS D E T L ++ GA+ H+ Sbjct: 351 QNYLLTGFMGSAPNLLTPNPADPTTWTLARSSQMKDQTNEIFSNQTNLTAKFDTGAVKHS 410 Query: 487 LLLGLDLTRLRQREQRYRGDA---------PSLDLAQPVYGLPIAMASQLVAQLAEDMQQ 537 L+ G++L+ +QR Y G P+ L + Y P+ + + Sbjct: 411 LVTGVELSSEKQRSLGYAGLGTISAANLYNPNPYLVRTGYN-PVGNGTNSEGR----TNT 465 Query: 538 SGLYLQDQIRQGPLVWTL--GSRYDRVIDTNRNTLAQTRQDTRAHAWSH---RLGVSWKL 592 +YL D + P W + G R D ++ R T + + +LG +K Sbjct: 466 LSVYLFDTLELSPQ-WQINGGVRVDHYDTKYESSTLNVRNATLNKSGTLLNWKLGGLYKP 524 Query: 593 TPTLAPYLNYSTAFLPQPGQD---------ANGQPFAPTHARQLEAGLKFQPQQGRAIYT 643 T + Y++Y+T+ P G + A + P R E G K+ R T Sbjct: 525 TEDSSLYVSYATSKQPPGGSNFALSSNANSAANVNYDPQETRTAEIGAKWDLLDKRLGLT 584 Query: 644 AALFQI-TKDHVLSNDPGHANFYVDQSQVRSRGLELEARGELWPGLNLLAAYSYTQALNI 702 A+++ K+ + N + + + R G+EL GE+ + A Y+ + Sbjct: 585 TAIYRTDVKNEIEGN---ATDGFTQTGKKRVEGVELGVVGEITSAWQVSAGYTRMRTDVT 641 Query: 703 AQADPGLLGKSPV-LVPRQAASLWLDYT-PGDAWPGLGLGGGARYSGASYANADNSVRNA 760 A A G S + P+QA + W Y PG G +GGGAR+ A + D +V Sbjct: 642 AGAIVNQDGTSGLSYTPKQAFTAWTTYKLPG----GFTIGGGARFVDALHKPKDGAVGTP 697 Query: 761 ATV----LLDAMLRLDQGR-WRYSLNVSNLANRRNTSCLAEPTLTCFWAEERMAVLSARY 815 V + DAM + + LN+ NLA++ + + + ER A LSA Sbjct: 698 QFVESYWVYDAMASYEVSKNVSLQLNLYNLADKDYVASINKSGYRYTPGIERSARLSANI 757 Query: 816 RW 817 ++ Sbjct: 758 KF 759 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.317 0.133 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,555,576 Number of extensions: 65251 Number of successful extensions: 191 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 186 Number of HSP's successfully gapped: 3 Length of query: 817 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 728 Effective length of database: 707,092 Effective search space: 514762976 Effective search space used: 514762976 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)