BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2191.p
         (298 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094017|ref|YP_001099092.1| putative haloacetate dehalogena...   109   2e-25

>gi|134094017|ref|YP_001099092.1| putative haloacetate dehalogenase
           [Herminiimonas arsenicoxydans]
          Length = 308

 Score =  109 bits (272), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/295 (31%), Positives = 134/295 (45%), Gaps = 22/295 (7%)

Query: 16  LIDVD-GIRLHYVEAGTGAPVLLIPGWPQSWFAWRDVIPRLARAGRRVIAIDPRGMGDSA 74
           LID   G+++H    G G P+LL+ G PQ+   W  V P LA A   ++  D RG GDS+
Sbjct: 22  LIDTAAGVQIHVRVFGEGPPLLLLHGHPQTHAIWHRVAPTLA-ANFTLVLADLRGYGDSS 80

Query: 75  HPQ-----DGFTPGIVAAEIHRFAQLTGLLEAGKLDVAGHDVGAWIAYAYAADWPEDVRT 129
            PQ       ++   +A ++ R  Q  G     +  V  HD GA +A+  A D P  V  
Sbjct: 81  KPQGDAVHGNYSKRTMALDMLRVMQALG---HERFAVLAHDRGARVAHRLAVDHPAAVSR 137

Query: 130 LSLLDAALPGISP-LPTTEIPTDEINKRTWH-FSFNRLPDLPEILVRGHERPYLTWLFTQ 187
           L  LD     I+P L   E  +    +  WH F   +   LPE L+      Y+  +  +
Sbjct: 138 LVTLD-----IAPTLAMYEQTSQAFARAYWHWFFLIQAAPLPERLIEADPAAYIRDVMGR 192

Query: 188 KAARPWVFTPAVLDEYTRIYTQPGGTRTAFAYYRESFSRQALQANQAR-AARKLEMPVMA 246
           + A    F P  L EY R    PG        YR S S   +     R A  K+  P++A
Sbjct: 193 RHAGLAPFDPRALAEYMRAMALPGAAHGLCEDYRASASIDLVHEQADRDAGHKMSQPLLA 252

Query: 247 IGGQLSVASSLFQTL---QGIASNVCGQVIADCGHFVMEECPEEVAGHLLDFISA 298
           + G   VA   F TL     +AS+V GQ +  CGH++ EE P+ +   +L F+ A
Sbjct: 253 LWGAEGVAQRCFDTLAEWHRVASDVRGQALP-CGHYIPEEAPDALLAQVLPFLQA 306


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.137    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 616,835
Number of extensions: 27046
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 217
Effective length of database: 733,452
Effective search space: 159159084
Effective search space used: 159159084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)