BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2189.p (223 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095287|ref|YP_001100362.1| two-component regulatory system... 211 2e-56 gi|134095857|ref|YP_001100932.1| two-component regulatory system... 184 3e-48 gi|134095798|ref|YP_001100873.1| OmpR family response regulator ... 176 6e-46 gi|134096087|ref|YP_001101162.1| two-component system regulatory... 145 2e-36 gi|134094768|ref|YP_001099843.1| response regulator in two-compo... 136 8e-34 >gi|134095287|ref|YP_001100362.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 220 Score = 211 bits (538), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 117/218 (53%), Positives = 148/218 (67%), Gaps = 2/218 (0%) Query: 1 MRILLVEDDTMIGEEVRSALKDASYAADWVSDGARALAALAQQDYEAVLLDLGLPGADGL 60 MR+LL+EDD MIGE + L+ YA DWV DG A A+ Y+ VLLDLGLPG GL Sbjct: 1 MRVLLIEDDPMIGESLEEGLRKEQYAVDWVRDGHAAELAICSHTYDIVLLDLGLPGKQGL 60 Query: 61 SVLRQLR-SHSTIPVLIITARDGVQDRIAGLDTGADDYLLKPFDMGELLARLRAVMRRKS 119 +VL R H VLII+ARD R+ GLD+GADDYL+KPFD+ EL AR+RA++RR+S Sbjct: 61 AVLTNYRRKHGEAAVLIISARDATAMRVQGLDSGADDYLVKPFDLDELFARMRALLRRRS 120 Query: 120 GAATDVLDNGQLALDVAAKTARWQQQPPVALSAREFALLLALMRRPGAILSRTELEERIY 179 G + L +L ++ A A + V SAREFALLLAL+ PG ++SRT+LEER+Y Sbjct: 121 GRVSSELIYRELTMNPATHEAAFNGAS-VHFSAREFALLLALIDPPGRVMSRTQLEERLY 179 Query: 180 GWGEEVESNAVEFLIHSLRKKLDRDAIKNVRGMGWMVA 217 GW EE+ESN +E IH LRKKL D IKNVRG+G+ + Sbjct: 180 GWNEEIESNTIEVYIHGLRKKLGTDFIKNVRGVGYKIG 217 >gi|134095857|ref|YP_001100932.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 184 bits (467), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 99/222 (44%), Positives = 144/222 (64%), Gaps = 4/222 (1%) Query: 1 MRILLVEDDTMIGEEVRSALKDASYAADWVSDGARALAALAQQDYEAVLLDLGLPGADGL 60 MRIL+VEDD ++ + AL A YA D+ +G A AL+ Y VLLD+ LP DGL Sbjct: 1 MRILIVEDDAVLAAALTRALTQAGYAVDYADNGEDANRALSNDAYALVLLDIALPKMDGL 60 Query: 61 SVLRQLRSH-STIPVLIITARDGVQDRIAGLDTGADDYLLKPFDMGELLARLRAVMRRKS 119 +VLR+LR S +PVLI+TARD + DR+AGLD GADDY+ KPFD+ E AR+RA++RR Sbjct: 61 AVLRRLRERKSRVPVLILTARDTLDDRVAGLDLGADDYMTKPFDLLEFEARVRALIRRGQ 120 Query: 120 GAATDVLDNGQLALDVAAKTARWQQQPPVALSAREFALLLALMRRPGAILSRTELEERIY 179 A L +G L D+ A + PV LS RE A+ L+ R G ++++ ++ +R++ Sbjct: 121 FDAGKSLTHGGLRFDLEAHRL-FHNDVPVELSVRELAVFEVLLSRQGQVVTKEQMVDRLF 179 Query: 180 GWGEEVESNAVEFLIHSLRKKLD--RDAIKNVRGMGWMVARN 219 GWG++ SNA+E +H +RKKL+ I+ VRGMG+++ ++ Sbjct: 180 GWGDDGGSNAIEVYVHRMRKKLEPYNITIRTVRGMGYLLEKS 221 >gi|134095798|ref|YP_001100873.1| OmpR family response regulator [Herminiimonas arsenicoxydans] Length = 233 Score = 176 bits (447), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 92/221 (41%), Positives = 146/221 (66%), Gaps = 4/221 (1%) Query: 1 MRILLVEDDTMIGEEVRSALKDASYAADWVSDGARALAALAQQDYEAVLLDLGLPGADGL 60 MRILL EDD+++ + + +L+ + Y D V +G A +AL+ QD++ ++LDLGLP GL Sbjct: 1 MRILLAEDDSVLADGLTRSLRQSGYVTDCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 Query: 61 SVLRQLRS-HSTIPVLIITARDGVQDRIAGLDTGADDYLLKPFDMGELLARLRAVMRRKS 119 VL++LR+ +S +PVLI+TA D ++ R+ GLD GADD++ KPF + EL AR+RA+ RR + Sbjct: 61 EVLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTRRGA 120 Query: 120 GAATDVLDNGQLALDVAAKTARWQQQPPVALSAREFALLLALMRRPGAILSRTELEERIY 179 G V+ +G L+ D + A Q + LSARE LL L++R G ++S+ +L + + Sbjct: 121 GGGPTVIKHGPLSYDQVGRIAYINDQ-MLELSARELGLLEVLLQRSGRLVSKEQLVDHLC 179 Query: 180 GWGEEVESNAVEFLIHSLRKKLDRDAIK--NVRGMGWMVAR 218 W EEV +NA+E +H LRKK++ ++ VRG+G+ + + Sbjct: 180 EWSEEVSNNAIEVYVHRLRKKIEIGGLRIATVRGLGYCLEK 220 >gi|134096087|ref|YP_001101162.1| two-component system regulatory protein [Herminiimonas arsenicoxydans] Length = 229 Score = 145 bits (365), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 135/223 (60%), Gaps = 12/223 (5%) Query: 1 MRILLVEDDTMIGEEVRSALKDASYAADWVSDGARALAALAQQDYEAVLLDLGLPGADGL 60 MRIL++ED+ I + + L+ Y D ++G A AQ +Y+AV+LD+ LPG DGL Sbjct: 1 MRILIIEDNADIVANLYAFLEPRGYVLDCAANGYAGFALAAQHEYDAVILDIKLPGIDGL 60 Query: 61 SVLRQLRS--HSTIPVLIITARDGVQDRIAGLDTGADDYLLKPFDMGELLARLRAVMRRK 118 ++ R++R + PVL++TARD + D++AG D+GADDYL+KPF + E+ RL+A++RR Sbjct: 61 TLCRKMRDELQNDTPVLMLTARDTLDDKVAGFDSGADDYLVKPFSLLEVEVRLKALIRRA 120 Query: 119 SGA--ATDVLDNGQLALDVAAKTARWQQQPPVALSAREFALLLALMRRPGAILSRTELEE 176 G T+ L G L D + + + P+AL+ F +L LM+ ++SR LE Sbjct: 121 RGKNQGTNFLSVGDLIFDTSTYQVK-RDGVPIALTKTGFKILSCLMKEAPKVVSRETLEL 179 Query: 177 RIYGWGEE-VESNAVEFLIHSLRKKLDRD----AIKNVRGMGW 214 + WG+ +S+A+ IH+LR+ LD+ ++ V+G+G+ Sbjct: 180 EV--WGDHPPDSDALRTHIHALRQALDKSHPFAMLRTVQGIGY 220 >gi|134094768|ref|YP_001099843.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 230 Score = 136 bits (343), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 134/224 (59%), Gaps = 11/224 (4%) Query: 1 MRILLVEDDTMIGEEVRSALKDASYAADWVSDGARALAALAQQDYEAVLLDLGLPGADGL 60 M++L+VED+ GE ++ L +A +A D+ ++G +Y+ ++LD+ LP DG Sbjct: 1 MKLLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGNYDLIILDVMLPDIDGW 60 Query: 61 SVLRQLRSH-STIPVLIITARDGVQDRIAGLDTGADDYLLKPFDMGELLARLRAVMRRKS 119 +L+ LR+ + +P L +TARDGV DR+ GL+ GADDY++KPF ELLAR+R ++RR Sbjct: 61 KILQALRNAGNNVPALFLTARDGVADRVKGLELGADDYVVKPFAFSELLARVRTLLRR-- 118 Query: 120 GAATDVLDNGQ---LALDVAAKTARWQQQPPVALSAREFALLLALMRRPGAILSRTELEE 176 G + ++D Q L LD+A + A + + L+ +EF LL L+R G +L R+ + Sbjct: 119 GIPSPLVDRMQVSDLVLDLARRAAT-RAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIAS 177 Query: 177 RIYGWGEEVESNAVEFLIHSLRKKLDRDA----IKNVRGMGWMV 216 +I+ ++N ++ I LR K+D D I +RG+G+++ Sbjct: 178 QIWDINFNSDTNVIDVAIRRLRSKMDDDYEPKLISTIRGVGYVL 221 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.135 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 389,467 Number of extensions: 13844 Number of successful extensions: 114 Number of sequences better than 1.0e-08: 25 Number of HSP's gapped: 95 Number of HSP's successfully gapped: 25 Length of query: 223 Length of database: 1,000,347 Length adjustment: 78 Effective length of query: 145 Effective length of database: 743,337 Effective search space: 107783865 Effective search space used: 107783865 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)