BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2188.p (451 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two... 209 2e-55 gi|134095799|ref|YP_001100874.1| putative two-component sensor k... 176 2e-45 gi|134095856|ref|YP_001100931.1| putative transmembrane sensor h... 160 2e-40 gi|134094769|ref|YP_001099844.1| sensor kinase CopS like [Hermin... 97 1e-21 gi|134093798|ref|YP_001098873.1| sensory histidine kinase in two... 92 5e-20 >gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two-component regulatory system with QseB, regulates flagella and motility by quorum sensing [Herminiimonas arsenicoxydans] Length = 430 Score = 209 bits (533), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 139/351 (39%), Positives = 202/351 (57%), Gaps = 18/351 (5%) Query: 106 GFQTVFMVHEDFRVYVQPLPSGRRIVLAQETDARNSIAYQSAWRALLPVLILVPVLLLAL 165 GF+++ + + +RVY + R I +AQ RN +A A R+LLP L+++PVL L + Sbjct: 64 GFKSLSLRGKRWRVYSEA-DQDRIIQVAQPKAVRNEMAASMALRSLLPFLVMIPVLALFI 122 Query: 166 RRIVRKLFAPLSSLRQEIDQRRDDQLAPIATAALPTEIAPFVEAINRLLTRVQNAMTTQR 225 +V + PL L + I +R + L P+ P E+ P + A+N LLTR+ + TQR Sbjct: 123 WIVVGRSLYPLHHLARAIGRRSSNALEPLPGERYPPELQPMLAALNDLLTRLDQTLVTQR 182 Query: 226 RFVADAAHELRTPLTALSLQAERLQQSELSDTARER---LQRLSSGIERSKALVTQLLAL 282 FVADAAHELRTPLTAL LQ LQ E + R+R ++L + R+ LV QLL L Sbjct: 183 AFVADAAHELRTPLTALKLQ---LQLVERENDDRQRATGFRKLHERLNRATHLVQQLLTL 239 Query: 283 ARTQSQGMTEPVARSRFALREAVRPVLEDLLPLAQHKDIDLGV----DSSLDAEVDTSLA 338 AR + + + + LR+ V+ D P A+HK +DLG+ D DA + T Sbjct: 240 ARHEYR--IADRSSQKIDLRQLTARVVSDYAPQAEHKGVDLGIAINDDQGSDAAMITGNQ 297 Query: 339 D-LQLLLSNLIDNAIRYTPAGGCISLALVTGAQVRPGMARLELTDNGPGIPAAERERVFE 397 D L++LL NL+DNA+RYTP+ G + + + T + R++ DNGPGIP ++ERVF+ Sbjct: 298 DSLRILLGNLVDNAVRYTPSHGRVDVTVNTSTADHTVLLRVK--DNGPGIPVQDQERVFD 355 Query: 398 PFYRLDPSAAPGSGLGLAIAQSLAQRLGITIGLEMADPVAQRGLRVVLDIP 448 FYR D + GSGLGL IA+++A + TI L AD ++ GL V + P Sbjct: 356 RFYRRDGTGESGSGLGLFIAKTIATQHEATIELSTAD--SKGGLIVTVRFP 404 >gi|134095799|ref|YP_001100874.1| putative two-component sensor kinase transcriptional regulatory protein [Herminiimonas arsenicoxydans] Length = 512 Score = 176 bits (447), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 123/351 (35%), Positives = 201/351 (57%), Gaps = 32/351 (9%) Query: 96 ELPLPAGLKDG------FQTVFMVHEDFRV----------YVQP-LPSGRRIVLAQ--ET 136 E+PLP ++ F+ F+ + + R+ V+P L R+ L Q ET Sbjct: 127 EMPLPKDAEESAPWSTKFRYDFIHNTEVRIAYIYVDLHKTQVEPQLSIEPRMALVQVGET 186 Query: 137 -DARNSIAYQSAWRALLPVLILVPVLLLALRRIVRKLFAPLSSLRQEIDQRRDDQLAPIA 195 D R+ + Q ++P I++P+ L+ + + + PL+ L+Q I RR D L+PI Sbjct: 187 LDKRSQLVNQIIKGVIVPEFIILPIALILVWFALTRGLRPLAELQQRIRARRPDDLSPID 246 Query: 196 TAALPTEIAPFVEAINRLLTRVQNAMTTQRRFVADAAHELRTPLTALSLQAE-RLQQSEL 254 + +P EI P V ++N +L R+ ++ Q+RF+ADAAH+++TPL + +Q+E L+Q++ Sbjct: 247 SGHVPEEIIPLVGSLNDMLERLSQSIKVQKRFIADAAHQMKTPLAGMRMQSELALRQTDH 306 Query: 255 SDTARERLQRLSSGIERSKALVTQLLALARTQSQG-MTEPVARSRFALREAVRPVLEDLL 313 ++ + L++L+ + + +V QLLALAR ++Q T+P+ L E R +++ + Sbjct: 307 AEIHKS-LEQLAKSSKSATRMVNQLLALARAENQTPQTKPM--QVLELSELARDTVQNWV 363 Query: 314 PLAQHKDIDLGV---DSSLDAEVDTSLADLQLLLSNLIDNAIRYTPAGGCISLALVTGAQ 370 + ++ IDLG D ++ A D ++ L LL+NLIDNA+ YTPAGG ++ + T Q Sbjct: 364 QTSFNRKIDLGFEQPDEAVMARGDATM--LHELLNNLIDNALSYTPAGGNATVRVRTDQQ 421 Query: 371 VRPGMARLELTDNGPGIPAAERERVFEPFYRLDPSAAPGSGLGLAIAQSLA 421 G+A LE+ DNGPGI ER +FE FYR+ S GSGLGLAI + +A Sbjct: 422 A--GLAFLEVEDNGPGIAPHERSHIFERFYRILGSNVEGSGLGLAIVREIA 470 >gi|134095856|ref|YP_001100931.1| putative transmembrane sensor histidine kinase transcription regulator protein [Herminiimonas arsenicoxydans] Length = 448 Score = 160 bits (404), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 106/268 (39%), Positives = 150/268 (55%), Gaps = 24/268 (8%) Query: 173 FAPLSSLRQEIDQRRDDQLAPIATAALPTEIAPFVEAINRLLTRVQNAMTTQRRFVADAA 232 APL L+QE+ R L+PIA +P E+ P V A+N L+TRV + Q RF+AD A Sbjct: 175 LAPLRKLQQEVGMRSHLDLSPIAADNVPGEVEPLVGAVNDLMTRVDAVLGFQGRFIADTA 234 Query: 233 HELRTPLTALSLQAE-RLQQSELSDTARERLQRLSSGIERSKALVTQLLALARTQSQGMT 291 H+LRTP+ L E L++++L+ R L L + ER LV+QLL+LAR + + Sbjct: 235 HQLRTPVAGLKAHIELALRENDLTQVKRA-LGHLYTSAERLSRLVSQLLSLARNEPNNVA 293 Query: 292 ---EPVARSRFALREAVRPVLEDLLPLAQHKDIDLGVDSS-----LDAEVDTSLADLQLL 343 P ++ ALR A ++ +PLA K IDLG D++ L+ E A + + Sbjct: 294 VNFAPFDLNQLALRAA-----QEWVPLAYKKQIDLGFDTAGQPVLLNGEA----ARVTEM 344 Query: 344 LSNLIDNAIRYTPAGGCISLALVTGAQVRPGMARLELTDNGPGIPAAERERVFEPFYRLD 403 ++NL+DNAIRYTP GG +++ + A L ++D+G IP ER R+FE F+RL Sbjct: 345 INNLVDNAIRYTPPGGRVTVHVRQDEH-----AHLIVSDDGARIPVEERTRIFERFHRLL 399 Query: 404 PSAAPGSGLGLAIAQSLAQRLGITIGLE 431 S GSGLGLAI +A TI LE Sbjct: 400 GSHEEGSGLGLAIVHEIATLHNATITLE 427 >gi|134094769|ref|YP_001099844.1| sensor kinase CopS like [Herminiimonas arsenicoxydans] Length = 458 Score = 97.4 bits (241), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 87/339 (25%), Positives = 164/339 (48%), Gaps = 22/339 (6%) Query: 104 KDGFQTVFMVHEDFRVYVQPLPS--GRRIVLAQETDARNSIAYQSAWRALLPVLILVPVL 161 K+GF H +F+ L + G +++ D + S +R L + ++V + Sbjct: 111 KNGFDVKIDEHREFQAIRAELKASAGSPVIVVIAVDKAIHTHFMSMFRTTLMLYVMVAAI 170 Query: 162 LLAL--RRIVRKLFAPLSSLR---QEIDQRRDDQLAPIATAALPTEIAPFVEAINRLLTR 216 + R+ +PL ++ Q + + ++ P+ A+PTE+ +N +L R Sbjct: 171 ATVMLGWWAARQGLSPLRTMAARAQTVTSQNMNERMPVD--AVPTEMTDLAVKLNAMLDR 228 Query: 217 VQNAMTTQRRFVADAAHELRTPLTALSLQAE-RLQQSELSDTARERLQRLSSGIERSKAL 275 +QN + F AD AHELRTP++ + Q L QS + R+ L + ++R Sbjct: 229 LQNDIARLTEFSADLAHELRTPISNMLTQTHVVLNQSRSTADYRDSLSSNAEELQRLGNT 288 Query: 276 VTQLLALARTQSQGMTEPVARSRFALREAVRPVLEDLLPLAQHKDIDLGVDSSLDAEVDT 335 ++ +L LA+T++ G+ P + ++ + + +LE LA+ K + L + DA V Sbjct: 289 ISDMLFLAQTEN-GLALP-SVAKLNMARECQALLEFYEALAEEKKVVLRCEG--DAVVIG 344 Query: 336 SLADLQLLLSNLIDNAIRYTPAGGCISLALVTGAQVRPGMARLELTDNGPGIPAAERERV 395 + L+NL+ NAIRYTP+ G IS+ + + + + ++G IPA + + Sbjct: 345 DQLMFRRALNNLLSNAIRYTPSYGTISIKITSA----ESGTTITVQNDGEEIPAEIQPHL 400 Query: 396 FEPFYRLD----PSAAPGSGLGLAIAQSLAQRLGITIGL 430 F+ F+R D S + +GLGL+I +++ Q G ++ + Sbjct: 401 FDRFFRADKSRKKSESDSAGLGLSITRAIMQAHGGSVSV 439 >gi|134093798|ref|YP_001098873.1| sensory histidine kinase in two-component regulatory system with CusR, regulation of copper resistance, senses copper ions [Herminiimonas arsenicoxydans] Length = 482 Score = 92.0 bits (227), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 84/284 (29%), Positives = 139/284 (48%), Gaps = 25/284 (8%) Query: 148 WRALLPVLILVPVLLLALRRIVRKLFAPLSSLRQEIDQRRDDQL-APIATAALPTEIAPF 206 W L+ LI + V A++ R P+ + +EI R QL ++ +P E+A Sbjct: 180 WATLIVALIALVVAWFAVQWGHR----PIRKVSREIRAIRSSQLDVRLSPTDVPIELAEL 235 Query: 207 VEAINRLLTRVQNAMTTQRRFVADAAHELRTPLTALSLQAE-RLQQSELSDTARERLQRL 265 + N +L R+++ F AD AHELRTP+T LS Q + L Q +D RE L Sbjct: 236 AVSFNDMLGRIEDGFAKLANFSADIAHELRTPVTNLSTQTQVALSQVRSADEYREVLYSN 295 Query: 266 SSGIERSKALVTQLLALARTQSQGMTEPVARSRFALREAVRPVLEDLLPLAQHKDIDLGV 325 +R ++ +L LA+T++ + + + V+ + + LA+ +I L Sbjct: 296 LEEFDRLSLMIGDMLFLAQTENDPRNLRLTNTD--ITGLVQGLFDYFEVLAEDANITL-- 351 Query: 326 DSSLDAEVDTSLADLQLL---LSNLIDNAIRYTPAGGCISLALVTGAQVRPGMARLELTD 382 +L +V +AD ++ LSNL+ NAIRY+ G + + L A+ R + Sbjct: 352 --TLSGQVKPIIADRDMMLRALSNLLSNAIRYSLPGSSVIVRLHQDAK------RTTICV 403 Query: 383 NGPGIPAAERE--RVFEPFYRLDPS--AAPGSGLGLAIAQSLAQ 422 PG AE + ++F+ F+R+DPS G+GLGLAI +S+ + Sbjct: 404 ENPGEQIAEDDLPKLFDRFFRVDPSRQRKSGAGLGLAIVKSIIE 447 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.136 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 724,941 Number of extensions: 29028 Number of successful extensions: 189 Number of sequences better than 1.0e-08: 22 Number of HSP's gapped: 162 Number of HSP's successfully gapped: 22 Length of query: 451 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 366 Effective length of database: 720,272 Effective search space: 263619552 Effective search space used: 263619552 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)