BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2187.p
         (188 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094731|ref|YP_001099806.1| cytochrome b561 [Herminiimonas ...   116   7e-28
gi|134093591|ref|YP_001098666.1| putative cytochrome b561 membra...    72   1e-14

>gi|134094731|ref|YP_001099806.1| cytochrome b561 [Herminiimonas
           arsenicoxydans]
          Length = 181

 Score =  116 bits (291), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 70/183 (38%), Positives = 96/183 (52%), Gaps = 8/183 (4%)

Query: 2   NNIDNPLPQPTRYHPYSVILHWVMFLLFVVALATIEYREDIPKGDPLRDLLRTVHMHAGQ 61
           N ID        Y    V LHW+  +L  +A AT+E  +   +G PLR  ++T H  AG 
Sbjct: 5   NTIDG-------YGSVPVALHWLTAILIAIAYATMELHDLAERGTPLRQSMKTWHYMAGI 57

Query: 62  LVLILVILRLIARKMLGVPPELPMPKLQRLG-AHAVHLLLYVVMIGLPLTGILFTQAGGR 120
            V  L  +RL  R     P  LP P L ++  A  V + LY +M+GLPL G L     GR
Sbjct: 58  SVFALTWVRLSIRLAGATPQILPTPPLMQIRLAGIVKITLYCLMLGLPLFGWLTLNGKGR 117

Query: 121 DVVFFGMTLPVILAKDMALRGPIKEVHELMGNAVYFLVGLHVLGALWHQLFDRMPILQRM 180
           +V +FG  LP ++ K+ AL    KE+HE + N  YF++GLH L AL+H  F R   ++ M
Sbjct: 118 EVEYFGYVLPTLIGKNPALADLFKEIHETLANTGYFVIGLHALAALYHHYFRRDSTMRMM 177

Query: 181 SLR 183
             R
Sbjct: 178 WFR 180


>gi|134093591|ref|YP_001098666.1| putative cytochrome b561 membrane
           protein [Herminiimonas arsenicoxydans]
          Length = 160

 Score = 72.4 bits (176), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 73/142 (51%), Gaps = 2/142 (1%)

Query: 41  DIPKGDPLRDLLRTVHMHAGQLVLILVILRLIARKMLGVPPELP-MPKLQRLGAHAVHLL 99
           DIP   P +    + H   G  +  L  LRL+ R     P   P +   Q+  A+  H L
Sbjct: 17  DIPGLTPTKLKYFSWHKWLGVTIFGLACLRLLWRLTHTPPAYAPGISFWQKKMANTAHGL 76

Query: 100 LYVVMIGLPLTGILFTQAGGRDVVFFG-MTLPVILAKDMALRGPIKEVHELMGNAVYFLV 158
           LY+++  +PL+G  +T A G  VV+ G + LPV +A D  L+  +K+VH      +  + 
Sbjct: 77  LYLLIFAVPLSGYFYTLAAGVPVVYLGILPLPVFIAPDPELKVLLKQVHYAFNVTLLIVF 136

Query: 159 GLHVLGALWHQLFDRMPILQRM 180
            LHVLGAL HQ  DR   LQRM
Sbjct: 137 CLHVLGALKHQFIDRDRTLQRM 158


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.330    0.147    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 376,394
Number of extensions: 15380
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 2
Length of query: 188
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 111
Effective length of database: 746,632
Effective search space: 82876152
Effective search space used: 82876152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 126 (53.1 bits)