BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2186.p (473 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093798|ref|YP_001098873.1| sensory histidine kinase in two... 140 2e-34 gi|134095799|ref|YP_001100874.1| putative two-component sensor k... 133 2e-32 gi|134094769|ref|YP_001099844.1| sensor kinase CopS like [Hermin... 130 2e-31 gi|134093857|ref|YP_001098932.1| putative two-component system s... 108 6e-25 gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two... 108 8e-25 >gi|134093798|ref|YP_001098873.1| sensory histidine kinase in two-component regulatory system with CusR, regulation of copper resistance, senses copper ions [Herminiimonas arsenicoxydans] Length = 482 Score = 140 bits (352), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 96/305 (31%), Positives = 167/305 (54%), Gaps = 8/305 (2%) Query: 165 LLFAGLAVALLVALAAASALLTNRLFGTVDRIAAQARRISDANLGERLADPDSDDEIGHL 224 L +A L VAL+ + A A+ + +++ + R I + L RL+ D E+ L Sbjct: 178 LWWATLIVALIALVVAWFAVQWGH--RPIRKVSREIRAIRSSQLDVRLSPTDVPIELAEL 235 Query: 225 VDTLNSMLARLERAFELQRNFTANAAHEIRSPLSRLRTEIELALRRPRSAEDYVATLQSC 284 + N ML R+E F NF+A+ AHE+R+P++ L T+ ++AL + RSA++Y L S Sbjct: 236 AVSFNDMLGRIEDGFAKLANFSADIAHELRTPVTNLSTQTQVALSQVRSADEYREVLYSN 295 Query: 285 LDEVGALTSMVEELLQLARLDAGQEGRSMECIGLDSLVREALARWQGVAEARRIRLVLQA 344 L+E L+ M+ ++L LA+ + + + LV+ ++ +AE I L L Sbjct: 296 LEEFDRLSLMIGDMLFLAQTENDPRNLRLTNTDITGLVQGLFDYFEVLAEDANITLTLSG 355 Query: 345 PQAVQARIGERAAML-VLNNLLDNAIKFSPPDTAIEVSVSSDASGATLVVADRGPGVAAT 403 V+ I +R ML L+NLL NAI++S P +++ V + DA T+ V + G +A Sbjct: 356 --QVKPIIADRDMMLRALSNLLSNAIRYSLPGSSVIVRLHQDAKRTTICVENPGEQIAED 413 Query: 404 DMGLLFERFYRGRASQVQQTSGAGLGLSIVRAVLEGYGASISLGNRSDGAGAECRLHFPT 463 D+ LF+RF+R S+ Q+ SGAGLGL+IV++++E + + +R+ + + P+ Sbjct: 414 DLPKLFDRFFRVDPSR-QRKSGAGLGLAIVKSIIEAHDGKVQATSRN--GLIKFLIELPS 470 Query: 464 VADQD 468 +++ D Sbjct: 471 ISNVD 475 >gi|134095799|ref|YP_001100874.1| putative two-component sensor kinase transcriptional regulatory protein [Herminiimonas arsenicoxydans] Length = 512 Score = 133 bits (334), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 90/244 (36%), Positives = 140/244 (57%), Gaps = 12/244 (4%) Query: 219 DEIGHLVDTLNSMLARLERAFELQRNFTANAAHEIRSPLSRLRTEIELALRRPRSAEDYV 278 +EI LV +LN ML RL ++ ++Q+ F A+AAH++++PL+ +R + ELALR+ AE + Sbjct: 252 EEIIPLVGSLNDMLERLSQSIKVQKRFIADAAHQMKTPLAGMRMQSELALRQTDHAEIH- 310 Query: 279 ATLQSCLDEVGALTSMVEELLQLARL-DAGQEGRSMECIGLDSLVREALARWQGVAEARR 337 +L+ + T MV +LL LAR + + + M+ + L L R+ + W + R+ Sbjct: 311 KSLEQLAKSSKSATRMVNQLLALARAENQTPQTKPMQVLELSELARDTVQNWVQTSFNRK 370 Query: 338 IRLVLQAP-QAVQARIGERAAML--VLNNLLDNAIKFSPP--DTAIEVSVSSDASGATLV 392 I L + P +AV AR G+ A ML +LNNL+DNA+ ++P + + V A A L Sbjct: 371 IDLGFEQPDEAVMAR-GD-ATMLHELLNNLIDNALSYTPAGGNATVRVRTDQQAGLAFLE 428 Query: 393 VADRGPGVAATDMGLLFERFYRGRASQVQQTSGAGLGLSIVRAVLEGYGASISLGNRSDG 452 V D GPG+A + +FERFYR S V+ G+GLGL+IVR + + A I + N Sbjct: 429 VEDNGPGIAPHERSHIFERFYRILGSNVE---GSGLGLAIVREIALQHNAEIEILNNPRC 485 Query: 453 AGAE 456 G + Sbjct: 486 QGQK 489 >gi|134094769|ref|YP_001099844.1| sensor kinase CopS like [Herminiimonas arsenicoxydans] Length = 458 Score = 130 bits (326), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/270 (30%), Positives = 148/270 (54%), Gaps = 7/270 (2%) Query: 196 IAAQARRISDANLGERLADPDSDDEIGHLVDTLNSMLARLERAFELQRNFTANAAHEIRS 255 +AA+A+ ++ N+ ER+ E+ L LN+ML RL+ F+A+ AHE+R+ Sbjct: 190 MAARAQTVTSQNMNERMPVDAVPTEMTDLAVKLNAMLDRLQNDIARLTEFSADLAHELRT 249 Query: 256 PLSRLRTEIELALRRPRSAEDYVATLQSCLDEVGALTSMVEELLQLARLDAGQEGRSMEC 315 P+S + T+ + L + RS DY +L S +E+ L + + ++L LA+ + G S+ Sbjct: 250 PISNMLTQTHVVLNQSRSTADYRDSLSSNAEELQRLGNTISDMLFLAQTENGLALPSVAK 309 Query: 316 IGLDSLVREALARWQGVAEARRIRLVLQAPQAVQARIGERAAM-LVLNNLLDNAIKFSPP 374 + + + L ++ +AE +++ L + V IG++ LNNLL NAI+++P Sbjct: 310 LNMARECQALLEFYEALAEEKKVVLRCEGDAVV---IGDQLMFRRALNNLLSNAIRYTPS 366 Query: 375 DTAIEVSVSSDASGATLVVADRGPGVAATDMGLLFERFYRGRASQVQ-QTSGAGLGLSIV 433 I + ++S SG T+ V + G + A LF+RF+R S+ + ++ AGLGLSI Sbjct: 367 YGTISIKITSAESGTTITVQNDGEEIPAEIQPHLFDRFFRADKSRKKSESDSAGLGLSIT 426 Query: 434 RAVLEGYGASISLGNRSDGAGAECRLHFPT 463 RA+++ +G S+S+ +R L+FP+ Sbjct: 427 RAIMQAHGGSVSVVSRDSKTA--FSLYFPS 454 >gi|134093857|ref|YP_001098932.1| putative two-component system sensory histidine kinase [Herminiimonas arsenicoxydans] Length = 467 Score = 108 bits (270), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 81/275 (29%), Positives = 142/275 (51%), Gaps = 16/275 (5%) Query: 195 RIAAQARRISDANLGERLADPDSDDEIGHLVDTLNSMLARLERAFELQRNFTANAAHEIR 254 ++A A + L +L D + E+ L+ N+ML RL+ + F+ + AHE R Sbjct: 202 KMARHAALVRPGKLQHQLDDQGAPSELLPLIHAFNAMLGRLQEGYLRLSQFSTDLAHEFR 261 Query: 255 SPLSRLRTEIELALRRPRSAEDYVATLQSCLDEVGALTSMVEELLQLARLDAGQEGRSME 314 +P++ L + ++AL RPRSA++Y + S ++E+ L+ M++ +L LAR++ Q M Sbjct: 262 TPVTSLLGQSQVALGRPRSADEYKQLVISNMEELERLSRMIDSMLFLARVEREQ----MS 317 Query: 315 CIGLDSLVREALAR----WQGVAEARRIRLVLQAPQAV--QARIGERAAMLVLNNLLDNA 368 LV++ R ++ +++ R + L Q V A++ RA L+NLL NA Sbjct: 318 VARYPLLVQDEFDRLCNFFEDMSDERGLILSNQGDGIVMADAQLLRRA----LSNLLSNA 373 Query: 369 IKFSPPDTAIEVSVSSDASGATLVVADRGPGVAATDMGLLFERFYRGRASQVQQTSGAGL 428 I+ + + IE+ +A L V + G + M LF+RFYR +++ + GL Sbjct: 374 IRHADKGSTIELRSRQEAEFVVLSVTNTGATIGPEHMPHLFDRFYRADSARTDSSESTGL 433 Query: 429 GLSIVRAVLEGYGASISLGNRSDGAGAECRLHFPT 463 GLSIVRA++ + ++ ++ E L+FPT Sbjct: 434 GLSIVRAIMTLHHGRATVTSQDKITHLE--LYFPT 466 >gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two-component regulatory system with QseB, regulates flagella and motility by quorum sensing [Herminiimonas arsenicoxydans] Length = 430 Score = 108 bits (269), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 129/254 (50%), Gaps = 19/254 (7%) Query: 220 EIGHLVDTLNSMLARLERAFELQRNFTANAAHEIRSPLSRLRTEIELALRRPRSAEDYVA 279 E+ ++ LN +L RL++ QR F A+AAHE+R+PL+ L+ +++L + R Sbjct: 159 ELQPMLAALNDLLTRLDQTLVTQRAFVADAAHELRTPLTALKLQLQL-VERENDDRQRAT 217 Query: 280 TLQSCLDEVGALTSMVEELLQLARLDAGQEGRSMECIGLDSLVREALARWQGVAEARRIR 339 + + + T +V++LL LAR + RS + I L L ++ + AE + + Sbjct: 218 GFRKLHERLNRATHLVQQLLTLARHEYRIADRSSQKIDLRQLTARVVSDYAPQAEHKGVD 277 Query: 340 LVLQAPQAVQARIGERAAM---------LVLNNLLDNAIKFSPPDTAIEVSVSSDASGAT 390 L + A+ G AAM ++L NL+DNA++++P ++V+V++ + T Sbjct: 278 LGI----AINDDQGSDAAMITGNQDSLRILLGNLVDNAVRYTPSHGRVDVTVNTSTADHT 333 Query: 391 LV--VADRGPGVAATDMGLLFERFYRGRASQVQQTSGAGLGLSIVRAVLEGYGASISLGN 448 ++ V D GPG+ D +F+RFYR + SG+GLGL I + + + A+I L Sbjct: 334 VLLRVKDNGPGIPVQDQERVFDRFYRRDGT---GESGSGLGLFIAKTIATQHEATIELST 390 Query: 449 RSDGAGAECRLHFP 462 G + FP Sbjct: 391 ADSKGGLIVTVRFP 404 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.134 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 769,529 Number of extensions: 28769 Number of successful extensions: 179 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 151 Number of HSP's successfully gapped: 18 Length of query: 473 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 388 Effective length of database: 720,272 Effective search space: 279465536 Effective search space used: 279465536 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)