BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2185.p (225 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094768|ref|YP_001099843.1| response regulator in two-compo... 181 3e-47 gi|134093856|ref|YP_001098931.1| two-component system response r... 157 5e-40 gi|134093799|ref|YP_001098874.1| response regulator in two-compo... 155 2e-39 gi|134093341|ref|YP_001098416.1| putative two-component system r... 139 9e-35 gi|134096087|ref|YP_001101162.1| two-component system regulatory... 135 1e-33 >gi|134094768|ref|YP_001099843.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 230 Score = 181 bits (458), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 102/223 (45%), Positives = 139/223 (62%), Gaps = 6/223 (2%) Query: 1 MHILLVEDDKKAARLLAQGLQEEGFEVVVAHSGEEA--LAHLGSAFDVAIFDRMLPGIDG 58 M +L+VED+ K L QGL E GF V A++G + LA G+ +D+ I D MLP IDG Sbjct: 1 MKLLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGN-YDLIILDVMLPDIDG 59 Query: 59 LTLCQRVRQAQVQWPILMLTARDALGEKVEGLNAGVDDYLAKPFAFEELLARLHALLRR- 117 + Q +R A P L LTARD + ++V+GL G DDY+ KPFAF ELLAR+ LLRR Sbjct: 60 WKILQALRNAGNNVPALFLTARDGVADRVKGLELGADDYVVKPFAFSELLARVRTLLRRG 119 Query: 118 -PSQLQVMHLQLADLRIDLLAHEVLRDGQRLDLTQKEYAVLVLLVRHAGNVVSRQQLAEQ 176 PS L V +Q++DL +DL R G+RL LT KE+ +L LVRH G V+ R +A Q Sbjct: 120 IPSPL-VDRMQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQ 178 Query: 177 VWHADLIAIDNLIDVHIKNLRRKIDTEGRPAMIETLRGQGFCI 219 +W + + N+IDV I+ LR K+D + P +I T+RG G+ + Sbjct: 179 IWDINFNSDTNVIDVAIRRLRSKMDDDYEPKLISTIRGVGYVL 221 >gi|134093856|ref|YP_001098931.1| two-component system response regulator [Herminiimonas arsenicoxydans] Length = 231 Score = 157 bits (396), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 90/220 (40%), Positives = 130/220 (59%), Gaps = 3/220 (1%) Query: 1 MHILLVEDDKKAARLLAQGLQEEGFEVVVAHSGEEALAHLG-SAFDVAIFDRMLPGIDGL 59 M IL++ED+ K L +GL E GF V +A +G + L A D+ + D MLP + G Sbjct: 1 MRILVIEDEPKIGDYLVRGLAESGFTVCLARNGRDGLFMATHEAVDLIVLDMMLPLLSGW 60 Query: 60 TLCQRVR-QAQVQ-WPILMLTARDALGEKVEGLNAGVDDYLAKPFAFEELLARLHALLRR 117 L +R QA Q P++ LTAR + ++V+GL G DDYL KPFAF ELLAR+ LLRR Sbjct: 61 ELLTALRSQADKQHIPVICLTARGEVEDRVKGLELGADDYLIKPFAFVELLARIRTLLRR 120 Query: 118 PSQLQVMHLQLADLRIDLLAHEVLRDGQRLDLTQKEYAVLVLLVRHAGNVVSRQQLAEQV 177 +++ D+ ID++ +V+R+G+R+ LT KE+ +L LL R V+SR +A QV Sbjct: 121 SPVRDEDFIRIGDMEIDVMKRKVMRNGKRITLTAKEFGLLHLLARRQSEVLSRSVIASQV 180 Query: 178 WHADLIAIDNLIDVHIKNLRRKIDTEGRPAMIETLRGQGF 217 W + + N+ID ++ LR KID +I T RG G+ Sbjct: 181 WDINFESDTNVIDAAVRRLRSKIDDPFETKLIHTQRGMGY 220 >gi|134093799|ref|YP_001098874.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 207 Score = 155 bits (391), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 87/202 (43%), Positives = 124/202 (61%), Gaps = 6/202 (2%) Query: 22 EEGFEVVVAHSGEEAL-AHLGSAFDVAIFDRMLPGIDGLTLCQRVRQAQVQWPILMLTAR 80 E GF V +A +G + + +D+ + D MLP +DG + + +R+A Q P+L LTAR Sbjct: 2 EAGFMVDLARNGLDGHHMAMNEQYDLVLLDVMLPDVDGWRIVKSLREAGKQMPVLFLTAR 61 Query: 81 DALGEKVEGLNAGVDDYLAKPFAFEELLARLHALLRR---PSQLQVMHLQLADLRIDLLA 137 + ++V+GL G DDYL KPFAF ELLAR+ LLRR PSQ + L++ADL +DL Sbjct: 62 GGVDDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGSAPSQSE--RLEVADLILDLPR 119 Query: 138 HEVLRDGQRLDLTQKEYAVLVLLVRHAGNVVSRQQLAEQVWHADLIAIDNLIDVHIKNLR 197 + R GQ++ LT KE+++L LL R G V+ R +A QVW + + N IDV I+ LR Sbjct: 120 RKATRMGQKIVLTNKEFSLLELLARRQGEVLPRSLIASQVWDMNFDSDSNAIDVAIRRLR 179 Query: 198 RKIDTEGRPAMIETLRGQGFCI 219 KID P +I T+RG G+ + Sbjct: 180 AKIDDPFEPKLIHTVRGMGYTL 201 >gi|134093341|ref|YP_001098416.1| putative two-component system regulatory protein [Herminiimonas arsenicoxydans] Length = 227 Score = 139 bits (351), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 85/228 (37%), Positives = 131/228 (57%), Gaps = 4/228 (1%) Query: 1 MHILLVEDDKKAARLLAQGLQEEGFEVVVAHSGEEALAHLGSA-FDVAIFDRMLPGIDGL 59 M+ L++ED+ L L+ G+ + VA +G+ + SA +DV + D LPG+DG+ Sbjct: 1 MYALIIEDNPDIVANLYGFLEPLGYTLDVALTGQAGVKRATSAHYDVIVLDLELPGLDGI 60 Query: 60 TLCQRVRQAQ-VQWPILMLTARDALGEKVEGLNAGVDDYLAKPFAFEELLARLHALLRRP 118 +C+++R+ Q + PILMLTARD + +K+ G G DDYL KPF+ EL ARL AL+RR Sbjct: 61 EVCRQLRKEQRLATPILMLTARDTVKDKLAGFEVGADDYLVKPFSLVELEARLKALVRRA 120 Query: 119 SQLQVMH-LQLADLRIDLLAHEVLRDGQRLDLTQKEYAVLVLLVRHAGNVVSRQQLAEQV 177 V H L+ +LR DL E R G +L LT Y +L L+R A +++R++L ++ Sbjct: 121 RNENVEHILEFGELRYDLSRCEATRAGHKLSLTPTGYKLLESLMRKAPALITREELLREI 180 Query: 178 WHADLIAIDNLIDVHIKNLRRKIDTEGRPAMIETLRGQGFCIRRQGQQ 225 W D D L HI LR+ +D M+ TL G G+ + ++ ++ Sbjct: 181 WGDDPPDSDAL-RTHIHALRQAMDRPFVHPMLRTLPGNGYRLIKEDEE 227 >gi|134096087|ref|YP_001101162.1| two-component system regulatory protein [Herminiimonas arsenicoxydans] Length = 229 Score = 135 bits (341), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 122/221 (55%), Gaps = 5/221 (2%) Query: 1 MHILLVEDDKKAARLLAQGLQEEGFEVVVAHSGEEALAHLGS-AFDVAIFDRMLPGIDGL 59 M IL++ED+ L L+ G+ + A +G A +D I D LPGIDGL Sbjct: 1 MRILIIEDNADIVANLYAFLEPRGYVLDCAANGYAGFALAAQHEYDAVILDIKLPGIDGL 60 Query: 60 TLCQRVR-QAQVQWPILMLTARDALGEKVEGLNAGVDDYLAKPFAFEELLARLHALLRRP 118 TLC+++R + Q P+LMLTARD L +KV G ++G DDYL KPF+ E+ RL AL+RR Sbjct: 61 TLCRKMRDELQNDTPVLMLTARDTLDDKVAGFDSGADDYLVKPFSLLEVEVRLKALIRRA 120 Query: 119 --SQLQVMHLQLADLRIDLLAHEVLRDGQRLDLTQKEYAVLVLLVRHAGNVVSRQQLAEQ 176 L + DL D ++V RDG + LT+ + +L L++ A VVSR+ L + Sbjct: 121 RGKNQGTNFLSVGDLIFDTSTYQVKRDGVPIALTKTGFKILSCLMKEAPKVVSRETLELE 180 Query: 177 VWHADLIAIDNLIDVHIKNLRRKIDTEGRPAMIETLRGQGF 217 VW D + + HI LR+ +D AM+ T++G G+ Sbjct: 181 VW-GDHPPDSDALRTHIHALRQALDKSHPFAMLRTVQGIGY 220 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.325 0.140 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 383,580 Number of extensions: 14168 Number of successful extensions: 153 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 128 Number of HSP's successfully gapped: 21 Length of query: 225 Length of database: 1,000,347 Length adjustment: 78 Effective length of query: 147 Effective length of database: 743,337 Effective search space: 109270539 Effective search space used: 109270539 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 127 (53.5 bits)