BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2178.p (573 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 276 3e-75 gi|134093308|ref|YP_001098383.1| putative methyl-accepting chemo... 270 1e-73 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 270 2e-73 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 268 5e-73 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 268 8e-73 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 276 bits (705), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 180/389 (46%), Positives = 249/389 (64%), Gaps = 20/389 (5%) Query: 188 TLMHDHAYHLEKAR----------IMRPVDD-FLAMLEARTTYEIAQAQQRADRLNVLTY 236 T + D +L +AR M+P D ++ +EA +I + R++ + Y Sbjct: 125 TAIRDDVMNLREARGAELQNAIANKMKPAADAYIQSVEAVVNAQINNFEDAKGRVDTI-Y 183 Query: 237 VLAGLVLVVLALSLVSL--------YRLIAGPLSQAAQVATRVAQGDLSGVIEVELKGET 288 A ++L+VL L ++L R I PL A VA VA GDL+G I V+ K ET Sbjct: 184 QSARMLLIVLGLVALTLGIVLAWMLTRSITKPLDYAVSVARLVASGDLTGRITVDSKDET 243 Query: 289 GQLLSSLQHMRQGLSHIVRQVRQSARVMRGSAGDIADGALDLAMRSEQQASSLQQTAAAM 348 GQLL +L+ M L+ + QVR + ++ IA G LDL+ R+E+QASSL++TA++M Sbjct: 244 GQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQASSLEETASSM 303 Query: 349 EQLSSTVQQSAQHARQASALAESAARGAVDGGAAVSQVVEAMNVLQGAAGRIVDIISVID 408 E+L+STV+Q+A +ARQA+ LA +A+ A GG VS+VV+ M+ + +A +IVDII VID Sbjct: 304 EELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSARKIVDIIGVID 363 Query: 409 AIAFQTNILALNAAVEAARAGSEGRSFAVVASEVRVLAQRSADAAHEIKRLIGASVQSIE 468 IAFQTNILALNAAVEAARAG +GR FAVVASEVR LAQRSA AA EIK LI SV ++ Sbjct: 364 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDDSVDKVD 423 Query: 469 EGCQRAQVAGQTMQEVVSKVDRVSQVIAEMASVSVQQSAGVVQIAQAVSAMDQVTQHNAV 528 G + AG TM EVV V RV+ ++AE+ + S +QSAG+ Q+ QA+ MDQVTQ NA Sbjct: 424 TGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAA 483 Query: 529 LVQQSAAAAEAMRLATERMSKLVGAFRLD 557 LV+++AAAAE++ +++ V F+LD Sbjct: 484 LVEEAAAAAESLNEQAANLAQAVSIFKLD 512 >gi|134093308|ref|YP_001098383.1| putative methyl-accepting chemotaxis sensory transducer [Herminiimonas arsenicoxydans] Length = 633 Score = 270 bits (690), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 164/344 (47%), Positives = 231/344 (67%), Gaps = 7/344 (2%) Query: 233 VLTYVLAGLVLVVLALSLVSLY----RLIAGPLSQAAQVATRVAQGDLSGVIEVELKGET 288 VL LAG + L L LY + + GPL+QA Q+A ++A GDL+ +E + E Sbjct: 174 VLRNFLAGAACIALLLLTACLYAGIRKTVTGPLAQATQLARQLATGDLTSRLETKRTDEI 233 Query: 289 GQLLSSLQHMRQGLSHIVRQVRQSARVMRGSAGDIADGALDLAMRSEQQASSLQQTAAAM 348 G LL ++ + QGL+++V +R + +IA G LDL+ R+EQQASSL++TA+AM Sbjct: 234 GLLLRAVNSIGQGLANVVWNIRHGTETLATETREIAAGNLDLSSRTEQQASSLEETASAM 293 Query: 349 EQLSSTVQQSAQHARQASALAESAARGAVDGGAAVSQVVEAMNVLQGAAGRIVDIISVID 408 E+++STV+++A +A QA+ALA +AA A+ GG V++VV M+ + ++ +I DIISVID Sbjct: 294 EEMTSTVKENAANAEQANALAHTAAEVAIKGGNVVAEVVHTMDSINQSSKKIADIISVID 353 Query: 409 AIAFQTNILALNAAVEAARAGSEGRSFAVVASEVRVLAQRSADAAHEIKRLIGASVQSIE 468 IAFQTNILALNAAVEAARAG +GR FAVVASEVR LAQRS+ AA EIK LI SV ++ Sbjct: 354 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSSAAAREIKTLIEDSVSKVQ 413 Query: 469 EGCQRAQVAGQTMQEVVSKVDRVSQVIAEMASVSVQQSAGVVQIAQAVSAMDQVTQHNAV 528 G + AG TM EVVS + RV ++ E++S S +QS G+ Q+ QA++ MDQVTQ NA Sbjct: 414 SGSKLVAHAGATMDEVVSSIQRVDNIMGEISSASREQSIGIEQVNQAIAQMDQVTQQNAA 473 Query: 529 LVQQSAAAAEAMRLATERMSKLVGAFRL---DHGDVPEDDGLVI 569 LV+Q+AA+AE+++ T ++ +V F + HG E +VI Sbjct: 474 LVEQAAASAESLQNQTTELNNVVSVFTIKSGSHGATDEAQEMVI 517 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 270 bits (689), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 172/356 (48%), Positives = 234/356 (65%), Gaps = 3/356 (0%) Query: 210 LAMLEARTTYEIAQAQQRADRLNVLTYVLAGLVLVVLALSLVSLYRLIAGPLSQAAQVAT 269 L M A T Y+ +Q R+ + VL GL+ V A+ L R I GPL + Sbjct: 170 LQMKSAATGYQDSQTLFHYFRIIAVVGVLLGLIGV--AIYAFFLIRAITGPLKEMLLHFD 227 Query: 270 RVAQGDLSGVIEVELKGETGQLLSSLQHMRQGLSHIVRQVRQSARVMRGSAGDIADGALD 329 +A GDL+ IEV+ + E G L+ LQ M++ L+ V QVR+ + + + +IA G LD Sbjct: 228 TIASGDLTSNIEVKSRNEMGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLD 287 Query: 330 LAMRSEQQASSLQQTAAAMEQLSSTVQQSAQHARQASALAESAARGAVDGGAAVSQVVEA 389 L+ R+EQQA+SL++TA++ME+L+STV+Q+ +ARQA+ LA SA+ AV GGA VS VV Sbjct: 288 LSSRTEQQAASLEETASSMEELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNT 347 Query: 390 MNVLQGAAGRIVDIISVIDAIAFQTNILALNAAVEAARAGSEGRSFAVVASEVRVLAQRS 449 M+ + +A +IVDII VID IAFQTNILALNAAVEAARAG +GR FAVVASEVR LAQRS Sbjct: 348 MDAINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 407 Query: 450 ADAAHEIKRLIGASVQSIEEGCQRAQVAGQTMQEVVSKVDRVSQVIAEMASVSVQQSAGV 509 A AA EIK LI SV ++ G + AG TM EVV V RV+ +++E+ + S +QSAG+ Sbjct: 408 AAAAKEIKHLIDDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGI 467 Query: 510 VQIAQAVSAMDQVTQHNAVLVQQSAAAAEAMRLATERMSKLVGAFRLD-HGDVPED 564 Q+ A+ MD+VTQ NA LV+Q+AAAA ++R +S +V F+L H P++ Sbjct: 468 EQVNTAIVQMDEVTQQNAALVEQAAAAASSLRDQATNLSTVVSVFKLQGHQSAPQN 523 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 268 bits (686), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 163/303 (53%), Positives = 214/303 (70%) Query: 255 RLIAGPLSQAAQVATRVAQGDLSGVIEVELKGETGQLLSSLQHMRQGLSHIVRQVRQSAR 314 R I PL A +VA VA GDL IEV ETGQLL +L+ M GL V +VR Sbjct: 214 RSITRPLEYAVEVARTVAGGDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIE 273 Query: 315 VMRGSAGDIADGALDLAMRSEQQASSLQQTAAAMEQLSSTVQQSAQHARQASALAESAAR 374 + ++ IA G LDL+ R+E+QASSL++TA++ME+L+STV+Q+A +ARQA+ LA SA+ Sbjct: 274 TIATASNQIAAGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASG 333 Query: 375 GAVDGGAAVSQVVEAMNVLQGAAGRIVDIISVIDAIAFQTNILALNAAVEAARAGSEGRS 434 A GG VSQVV+ M + +A +IVDII VID IAFQTNILALNAAVEAARAG +GR Sbjct: 334 VAEKGGVVVSQVVDTMEDINSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRG 393 Query: 435 FAVVASEVRVLAQRSADAAHEIKRLIGASVQSIEEGCQRAQVAGQTMQEVVSKVDRVSQV 494 FAVVASEVR LAQRSA AA EIK LIG SV ++ G + AG TM+EVV+ V RV+ + Sbjct: 394 FAVVASEVRNLAQRSAAAAKEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDI 453 Query: 495 IAEMASVSVQQSAGVVQIAQAVSAMDQVTQHNAVLVQQSAAAAEAMRLATERMSKLVGAF 554 ++E+ + S +QSAG+ Q+ QA+ MDQVTQ NA LV+++AAAAE++ ++++ V F Sbjct: 454 MSEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVF 513 Query: 555 RLD 557 +LD Sbjct: 514 KLD 516 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 268 bits (684), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 167/335 (49%), Positives = 234/335 (69%), Gaps = 5/335 (1%) Query: 229 DRLNVLTYVLAGLVLVVLALSLVSLYRLIAG---PLSQAAQVATRVAQGDLSGVIEV-EL 284 D L+ ++ G V+ +L +L++ +RL G PL +A +VA VA+GDL+ ++ E Sbjct: 184 DYLSGRMALIIGAVIAILLGTLIA-WRLTVGITRPLHEALKVAESVAEGDLTARSDMAET 242 Query: 285 KGETGQLLSSLQHMRQGLSHIVRQVRQSARVMRGSAGDIADGALDLAMRSEQQASSLQQT 344 + E G LLS+L M+ L V Q+R + ++ +IA G LDL+ R+EQQASSL++T Sbjct: 243 QDEPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRTEQQASSLEET 302 Query: 345 AAAMEQLSSTVQQSAQHARQASALAESAARGAVDGGAAVSQVVEAMNVLQGAAGRIVDII 404 A++ME+L+STV+Q+A ++RQA+ LA +A+ AV GGA VSQVV+ M + +A +IVDII Sbjct: 303 ASSMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAINNSAKKIVDII 362 Query: 405 SVIDAIAFQTNILALNAAVEAARAGSEGRSFAVVASEVRVLAQRSADAAHEIKRLIGASV 464 VID IAFQTNILALNAAVEAARAG +GR FAVVA+EVR LAQRSA AA EIK LIG SV Sbjct: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTLIGDSV 422 Query: 465 QSIEEGCQRAQVAGQTMQEVVSKVDRVSQVIAEMASVSVQQSAGVVQIAQAVSAMDQVTQ 524 + ++ G + AG TM E+V V RV+ ++AE+ + S +QS G+ Q+ QAVS MDQVTQ Sbjct: 423 EKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAVSQMDQVTQ 482 Query: 525 HNAVLVQQSAAAAEAMRLATERMSKLVGAFRLDHG 559 NA LV+++AAAAE+++ +++ V FR+ G Sbjct: 483 QNAALVEEAAAAAESLQDQARNLAEAVSVFRVGSG 517 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.127 0.335 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 655,341 Number of extensions: 20437 Number of successful extensions: 136 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 121 Number of HSP's successfully gapped: 14 Length of query: 573 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 486 Effective length of database: 713,682 Effective search space: 346849452 Effective search space used: 346849452 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)