BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2171.p (313 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093979|ref|YP_001099054.1| LysR family transcriptional reg... 105 4e-24 gi|134096588|ref|YP_001101663.1| putative transcriptional regula... 72 5e-14 gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herm... 63 2e-11 gi|134094120|ref|YP_001099195.1| putative transcriptional regula... 59 3e-10 gi|134093821|ref|YP_001098896.1| putative LysR-type regulator [H... 59 3e-10 >gi|134093979|ref|YP_001099054.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 297 Score = 105 bits (261), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 88/272 (32%), Positives = 132/272 (48%), Gaps = 18/272 (6%) Query: 1 MEIRQLRYFASIVEHGSIGKAALELGMVTSALSQQITRLENELATRLLQRTSTGVIPTDA 60 +E+RQLRYF ++ E G+AA+ L M LSQ I LE L +L +RTS V T A Sbjct: 3 IELRQLRYFVTVAEEMHFGRAAIRLHMTQPPLSQAIQSLEAMLGVQLFRRTSRSVALTPA 62 Query: 61 GIAFLKQAQLALRHLDDAALAARQARL----SGHVSVGLASSTAGVMGLAFMSAMRERYP 116 G A L +AQ L+ AAL R+ SG +S+ S+ + F+ RE YP Sbjct: 63 GSALLPEAQRILQQ--TAALPDLMRRVTSGASGRLSLAFVSTADYSVLPPFLREFRESYP 120 Query: 117 DVRLRMVESLSG-HLGAMLGARQIDLAILFQEEPAQ---RWSVLPLLDERLFVIGAQGLP 172 V + + E+ + L ++ R ID+ +L P + + LP+L E L + +GL Sbjct: 121 GVEIDLREATTDVQLDDLMQGR-IDVGLLIPPLPDKAKLQLDYLPVLSEPLILAAPKGLK 179 Query: 173 GLPGGRQARLGKLGELPLILPTRK--HGLRSLLDAAFHHAGYSPHIVMEVDGLPMLMDAV 230 L G + L L ELPLI+ R+ + + + AG +PHI E + ++ V Sbjct: 180 ALKGKQSVALQSLAELPLIIFPRRIAPAFHDAILSCYRDAGLTPHIGQEAIQMQTIIGLV 239 Query: 231 RAGIGATIQPGAA--LARPENAGLKSVPIAGS 260 AG+G + P + L RP G+ P+A Sbjct: 240 SAGMGIALVPQSVSNLKRP---GVDYKPLANK 268 >gi|134096588|ref|YP_001101663.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 312 Score = 71.6 bits (174), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 81/303 (26%), Positives = 135/303 (44%), Gaps = 19/303 (6%) Query: 1 MEIRQLRYFASIVEHGSIGKAALELGMVTSALSQQITRLENELATRLLQRTS--TGVIPT 58 M +RQL Y ++ +AA + ALS + LE EL ++QR G P Sbjct: 1 MFVRQLDYLVTLAREKHFARAAEICCVSQPALSAAVRNLETELGVAIVQRGQRFQGFTPE 60 Query: 59 DAGI-AFLKQAQLALRHLDDAALAARQARLSGHVSVGLASSTAGVMGLAFMSAMRERYPD 117 I + +Q AL + A +R +LSG + +G +T ++ L R ++ D Sbjct: 61 GERILDWARQTLAALEGMRQEASMSR-VKLSGTLRLGAIPTTMPIVSL-LTGPCRAQHAD 118 Query: 118 VRLRMVESLSGHLGAMLGARQIDLAILFQEEPAQRWS---VLPLLDERLFVIGAQGLPGL 174 +R R++ + + L ++D+ + + E+ QR S V PL ER ++ L + Sbjct: 119 LRQRVLSLSTEEIMRRLDDFELDIGLTYLED--QRLSGFHVQPLYRERYMLLARDQL-AM 175 Query: 175 PGGRQARLGKLGELPLILPTRKHGLRSLLDAAFHHAGYSPHIVMEVDGLPMLMDAVRAGI 234 + ELPL L T R ++DAAF A P++ +E D + L VR Sbjct: 176 GDRTEISWEDAAELPLCLLTAHMQNRRIVDAAFRRADVQPNVAVETDSVFALYSQVRHAG 235 Query: 235 GATIQPGAALA----RPENAGLKSVPIAGSDATRPNLIVSVSDDELSPAGLAARVLLAEV 290 ++ P + L R E A + VP + +R ++S++ D SP AAR + A++ Sbjct: 236 LFSVVPHSLLCLFESRDEMAAIPLVP----ELSRAIGMISLAHDPCSPVVTAARNIAAQI 291 Query: 291 ARQ 293 Q Sbjct: 292 DLQ 294 >gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 293 Score = 63.2 bits (152), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 71/122 (58%), Gaps = 2/122 (1%) Query: 6 LRYFASIVEHGSIGKAALELGMVTSALSQQITRLENELATRLLQRTSTGVIPTDAGIAFL 65 L+ F ++++ G++G AA LG TSA+S+ ++RLE +LAT LL RT+ + TD G FL Sbjct: 8 LKTFVAVIDSGTLGAAAQHLGQTTSAVSRGLSRLEEKLATSLLTRTTRRMELTDEGRLFL 67 Query: 66 KQAQLALRHLDDA--ALAARQARLSGHVSVGLASSTAGVMGLAFMSAMRERYPDVRLRMV 123 K+A+ L +D+A A+ R+ + SG + + A+ + ++ R YP + L + Sbjct: 68 KKARAILAAMDEAEEAIRVRRQQPSGRLRIDAAAPFILHAIVPHVAEFRALYPQITLELT 127 Query: 124 ES 125 + Sbjct: 128 SN 129 >gi|134094120|ref|YP_001099195.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 284 Score = 59.3 bits (142), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 68/141 (48%) Query: 6 LRYFASIVEHGSIGKAALELGMVTSALSQQITRLENELATRLLQRTSTGVIPTDAGIAFL 65 LR F ++V+ GS +AA + + S +SQQI RLE ++ LL R+ V T G L Sbjct: 7 LRSFVAVVDTGSFTRAADSVHLTQSTISQQIRRLEMQVGCDLLNRSGRYVTTTLEGERLL 66 Query: 66 KQAQLALRHLDDAALAARQARLSGHVSVGLASSTAGVMGLAFMSAMRERYPDVRLRMVES 125 + A + +D+A Q+ G V +G+ G +SA + Y VRL + Sbjct: 67 RYAHRIAQLMDEAMEQIAQSAGKGEVRLGVPEDFVGRALTPTLSAFIDTYSAVRLEVSSG 126 Query: 126 LSGHLGAMLGARQIDLAILFQ 146 +S L ++DLA++ Q Sbjct: 127 MSHELWQRFQRGELDLALIKQ 147 >gi|134093821|ref|YP_001098896.1| putative LysR-type regulator [Herminiimonas arsenicoxydans] Length = 289 Score = 58.9 bits (141), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 17/167 (10%) Query: 6 LRYFASIVEHGSIGKAALELGMVTSALSQQITRLENELATRLLQRTSTGVIPTDAGIAFL 65 +R F +++++GS KAA EL S +S I LE +L L R+ T+AG A L Sbjct: 1 MRVFVAVIDYGSFSKAARELHRTQSVISYTIANLEAQLNVALFDRSKRKPTLTEAGKALL 60 Query: 66 KQAQLALRHLDDAALAARQARLS----GHVSVGLASSTAGVMGLAFMSAMRERYPDVRLR 121 A+ +D A+ AR L+ VS+ + +A + A ++R+P V LR Sbjct: 61 ADARTVGLKVD--AMRARAKTLAQGLEAEVSIAVDVMFPNCRLVAALQAFQQRFPTVALR 118 Query: 122 M-VESLSGHLGAMLGARQ---------IDLAILFQEEPAQRWSVLPL 158 + +E+L G + ++G R +D A FQ +PA ++LP+ Sbjct: 119 LRIEAL-GAVMHLVGQRTCQIGIAGPMLDFADTFQSQPAGSITMLPV 164 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 536,897 Number of extensions: 21368 Number of successful extensions: 98 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 96 Number of HSP's successfully gapped: 9 Length of query: 313 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 231 Effective length of database: 730,157 Effective search space: 168666267 Effective search space used: 168666267 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)