BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2168.p (213 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095895|ref|YP_001100970.1| GntR family transcriptional reg... 68 3e-13 gi|134094688|ref|YP_001099763.1| GntR family transcriptional reg... 60 1e-10 >gi|134095895|ref|YP_001100970.1| GntR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 247 Score = 68.2 bits (165), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 11/195 (5%) Query: 15 IAEVLRTRIIRGEIAGGAALRQDHVAQEFQSSHVPVREAFRQLEAEGLVLTLPRRGVRVT 74 + E L+ II G +A G L + V + S P+REA + L +EGL+ P RG V+ Sbjct: 28 VVEHLQNLIIEGVLAPGMKLNEREVCERLGISRTPLREAMKVLASEGLIDIAPNRGAFVS 87 Query: 75 MVDRAAVKENAEMRGALEILALRHSVRKFTSEHIAQ---LEQAQQACAQAASLVEWDAAN 131 ++ + E EM LE L+ + + + IA L +A C L + + N Sbjct: 88 KMNDNEIWEAFEMMSGLEALSGELAAERISPAEIADIKVLHEAMLVCRAQNDLPGYYSRN 147 Query: 132 NLFHDILSSQCAMPRLLAVLKQLQLTNSRYLFSTGFKRGWQ----PRSDHDHMLIIDALK 187 H+ ++ ++L+Q+ L+ +R L + FK +Q R+ H+H +I AL+ Sbjct: 148 QTIHNKINEAARN----SMLRQIYLSINRRLLALRFKSNFQEAKWDRAIHEHDEMIKALE 203 Query: 188 DKKTDRAVQLLSMHI 202 + R +L H+ Sbjct: 204 SRDGKRLAAILRQHL 218 >gi|134094688|ref|YP_001099763.1| GntR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 220 Score = 59.7 bits (143), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 7/195 (3%) Query: 13 ERIAEVLRTRIIRGEIAGGAALRQDHVAQEFQSSHVPVREAFRQLEAEGLVLTLPRRGVR 72 E + E + I G++ G L + +A+EF S P+REA QL + G+++ PRRG Sbjct: 6 EVLREAIEEMIAVGKLPPGHHLDETELAKEFGVSRTPIREALIQLASMGIIVIRPRRGAI 65 Query: 73 VTMVDRAAVKENAEMRGALEILALRHSVRKFTSEHIAQLEQAQQACAQAASLVEWDA--- 129 V + + E E+ LE + R + R+ + A L+ AC +A + DA Sbjct: 66 VAEIGPQQLIEMFEVMAELEAMCARLAARRMSPAGHATLKATHLACEEARDSADSDAYFY 125 Query: 130 ANNLFHD--ILSSQCAMPRLLAVLKQLQLTNSRYLFSTGFKRGWQPRSDHDHMLIIDALK 187 N FH + SQ + A + Q +L R L + Q D +H ++DA+ Sbjct: 126 KNEEFHQQIYIGSQNSFLEEQARVLQRRLRPYRRL-QLRVRNRVQASFD-EHGAVVDAII 183 Query: 188 DKKTDRAVQLLSMHI 202 + K + A +LL HI Sbjct: 184 EGKGELAAELLRQHI 198 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.132 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 334,708 Number of extensions: 10891 Number of successful extensions: 52 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 51 Number of HSP's successfully gapped: 2 Length of query: 213 Length of database: 1,000,347 Length adjustment: 78 Effective length of query: 135 Effective length of database: 743,337 Effective search space: 100350495 Effective search space used: 100350495 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 127 (53.5 bits)