BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2167.p
         (336 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093392|ref|YP_001098467.1| biotin synthase [Herminiimonas ...   403   e-114

>gi|134093392|ref|YP_001098467.1| biotin synthase [Herminiimonas
           arsenicoxydans]
          Length = 339

 Score =  403 bits (1035), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 191/324 (58%), Positives = 245/324 (75%), Gaps = 6/324 (1%)

Query: 12  ASAPLHFHRPASAIDSRATE-----ALFALPFLDLLYQAQSVHRQHHPANQVQLSSLLSI 66
           +S P+ F  P + I   A       ALF LPF +L+++AQ+VHR+H   ++V+L++LLSI
Sbjct: 2   SSQPVTFQAPVAPIVPTAWPVDDVLALFNLPFNELMFRAQTVHREHFDPSEVELATLLSI 61

Query: 67  KTGGCAEDCGYCSQSAHHQDAGVPASKLMAVDDVVQAAQAARAQGATRFCMGAAWRNPKQ 126
           KTGGC EDCGYC Q+A + D GV A K++ +++V+ AA+ A+A GATRFCMGAAWR PK 
Sbjct: 62  KTGGCPEDCGYCPQAARY-DTGVTAQKILPLEEVLTAAREAKAHGATRFCMGAAWREPKD 120

Query: 127 RDMAALTDMVTQVRALGLETCMTLGMLEQAQADALKEAGLDYYNHNLDTAPDFYEQVIST 186
           RD+  + +MV +V+A+G+ETC TLGML + QA+ LK AGLDYYNHNLDTAP+FY  VIST
Sbjct: 121 RDLEKVEEMVREVKAMGMETCATLGMLGEGQAEKLKNAGLDYYNHNLDTAPEFYSNVIST 180

Query: 187 RSYQDRLDTLQRVQQAGLNVCCGGIIGMGETRAQRAGLIAQLASLPVPPQSVPINHLVPI 246
           R YQ+R+DTL RV+  G+ VCCGGI+GMGE+R QRAGLIAQL ++   P+SVP+N+LV +
Sbjct: 181 RDYQNRIDTLARVRNVGIKVCCGGIVGMGESRLQRAGLIAQLCNMDPYPESVPVNNLVQV 240

Query: 247 AGTPLQDVAPLDEFEFVRTVAVARITLPQAVIRLSAGRESMSESTQALCFAAGANSIFLG 306
            GTPL    P+D  EFVRTVAVARIT+P+A +RLSAGR  M E+ QALCF AGANSIF G
Sbjct: 241 EGTPLHGTDPIDPLEFVRTVAVARITMPKARVRLSAGRREMGEAIQALCFVAGANSIFYG 300

Query: 307 AKLLTTVNAPVSSDLELLARLGLQ 330
            KLLTT N    +D ELL +LG+ 
Sbjct: 301 DKLLTTGNPEALADQELLEKLGMH 324


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.130    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 547,566
Number of extensions: 20861
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 254
Effective length of database: 730,157
Effective search space: 185459878
Effective search space used: 185459878
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)