BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2165.p
         (386 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094876|ref|YP_001099951.1| 7-keto-8-aminopelargonic acid s...   397   e-112

>gi|134094876|ref|YP_001099951.1| 7-keto-8-aminopelargonic acid
           synthetase [Herminiimonas arsenicoxydans]
          Length = 388

 Score =  397 bits (1021), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/383 (56%), Positives = 272/383 (71%), Gaps = 5/383 (1%)

Query: 2   QDFTTDLATLASQSLLRTRRVVDGPQGPLLRVEGQDLLSFCSNDYLGLANHPEIVAAAMT 61
           +  TT+LA L  Q L R RR +  P G  + V+G+ LLSFCSNDYLGLA  P ++ AA  
Sbjct: 4   ETLTTELAALKKQGLQRQRRTLQTPCGVRIEVDGRSLLSFCSNDYLGLAAEPTLIDAARE 63

Query: 62  ALQQYGMGAAASALISGHSAAYETLEAELAAFVGLPAALCFSNGYMANLGVIGALVGAGD 121
           A  ++G+G+ +S L+SGH   +E LE +LA+FVG   AL FS GYMANLGV+ ALVG GD
Sbjct: 64  AALRWGVGSGSSHLVSGHFTPHEELEHKLASFVGGERALYFSTGYMANLGVVPALVGRGD 123

Query: 122 TVIVDRLSHASLIDGARLSGASLKVFPHNDTARLEQVLARCPAGRKLVATDAVFSMDGDL 181
            V  D+L+HASLID  +LS A  + +PH D   LE+ L+   A RKL+ TDAVFSMDGDL
Sbjct: 124 AVFADKLNHASLIDAVQLSRADHQRYPHGDLTALERQLSASKAKRKLILTDAVFSMDGDL 183

Query: 182 APLAELAAVCARHDAWLLVDDAHGLGVLGPQGQGSL---ALAQVQAPHVIYMGTLGKAAG 238
           APL +L  +  R+DAWL+VDDAHG G+LGPQG+G+L    +   + P ++YMGTLGKAAG
Sbjct: 184 APLTQLLELAERYDAWLMVDDAHGFGILGPQGRGTLVQYGIVLAEHPRLLYMGTLGKAAG 243

Query: 239 VAGAFVAGQRDVLAWIMQRARTYMFTTAHPPALAAATSASLGLI--AKEDWRRQRLHSLA 296
           V+GAF+AG  +V+ W++QRARTY+FTTA  P LAA    SL LI  A  D RR +L  L 
Sbjct: 244 VSGAFIAGAEEVIEWLLQRARTYIFTTASSPMLAATLLKSLDLIAGADGDARRSQLQLLI 303

Query: 297 AQLRQGLAGLPWTLLPSSTAIQPLIVGDNAAARALAAALRARGLWVPAICPPTVPKATAR 356
           A+L+ GL G  W LLPS TAIQ +I+G+N AA  +AAAL  +GLWVPAI PPTVPK TAR
Sbjct: 304 ARLQDGLQGSRWQLLPSPTAIQAIIIGENDAALRVAAALAEQGLWVPAIRPPTVPKGTAR 363

Query: 357 LRISLSAAHTPEQVAQLVAALTA 379
           LRI+LSAAH+   V +L+AAL A
Sbjct: 364 LRITLSAAHSLADVDRLLAALQA 386


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 607,266
Number of extensions: 21842
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 303
Effective length of database: 726,862
Effective search space: 220239186
Effective search space used: 220239186
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)