BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2163.p
         (227 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093391|ref|YP_001098466.1| dithiobiotin synthetase [Hermin...   167   4e-43
gi|134094205|ref|YP_001099280.1| cobyric acid synthase [Herminii...    55   3e-09

>gi|134093391|ref|YP_001098466.1| dithiobiotin synthetase
           [Herminiimonas arsenicoxydans]
          Length = 250

 Score =  167 bits (423), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 103/206 (50%), Positives = 139/206 (67%), Gaps = 3/206 (1%)

Query: 5   SYFVTGTDTGVGKTLVASALVHLHAARGVRAAGMKPVASGAF-LHPDG--QWCNDDVQAL 61
           S FVTGTDT +GKTL+++A++H     GVRAA +K VA+GA  +   G   W NDD  AL
Sbjct: 17  SCFVTGTDTEIGKTLISTAILHALVQGGVRAAAIKTVAAGATAIQTAGIEVWHNDDADAL 76

Query: 62  QAAASVALPPHLVNPYLLRQATAPHIAARAEGVRIELEHLVQCHAQLLALCDVLIVEGAG 121
             AA+V LP  L  PYLL  A APH+AA+ + + +E+ H+ +C+AQ+  + D ++VEG G
Sbjct: 77  AQAANVVLPTELATPYLLHAAAAPHVAAKLQNIALEIAHIKRCYAQVAEMADAVVVEGVG 136

Query: 122 GFMVPLDERYHSDDLVARLDLPVVLVVGIRLGCINHALLTQQAIRWRGLRLAGWVANRID 181
           GF VPL +     D   +LDLPV++VVG+RLGC++HALLT +AI  RGL+L GWVAN +D
Sbjct: 137 GFCVPLSDDADMADCARQLDLPVIMVVGLRLGCLSHALLTAEAIAARGLKLVGWVANTVD 196

Query: 182 AEEDQADAMIDTLVQRLQAPLLGRLP 207
           A    A+  +  L  RL APLLG +P
Sbjct: 197 AGMPFAEDNVAALTARLPAPLLGCVP 222


>gi|134094205|ref|YP_001099280.1| cobyric acid synthase
           [Herminiimonas arsenicoxydans]
          Length = 486

 Score = 55.1 bits (131), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 109/229 (47%), Gaps = 23/229 (10%)

Query: 5   SYFVTGTDTGVGKTLVASALVHLHAARGVRAAGMKP--VASGAFLHPDGQWCNDDVQALQ 62
           +  V GT +  GKT + +AL  L A +GVR    KP  +A  + +  DG       QALQ
Sbjct: 7   TLMVQGTTSDAGKTTLVAALCRLLAQQGVRVVPFKPQNMALNSAVTADGGEIG-RAQALQ 65

Query: 63  AAASVALPPHL-VNPYLLRQATAP------HIAARAE-GVR-------IELEHLVQCHAQ 107
           A A+  LPPH  +NP LL+ ++        H  AR +   R       I ++ +++ + +
Sbjct: 66  AVAA-GLPPHTDMNPILLKPSSDTGAQVIIHGRARNDMNARDYHAYKPIAMQAVLESYGR 124

Query: 108 LLALCDVLIVEGAGG-FMVPLDERYHSDDLVAR-LDLPVVLVVGI-RLGCINHALLTQQA 164
           L A  + ++VEGAG    V L +R  ++   A  +D PV+LV  I R G   H + T   
Sbjct: 125 LSAQYETVLVEGAGSPAEVNLRDRDIANMGFAEAVDCPVILVADIDRGGVFAHIIGTLAC 184

Query: 165 I-RWRGLRLAGWVANRIDAEEDQADAMIDTLVQRLQAPLLGRLPWAPGM 212
           +      R  G+V NR   +    +  +  L ++   P+L  LP+  G+
Sbjct: 185 LSESERKRTIGFVINRFRGDISLLEPGLRWLEEQTGKPVLAVLPYLHGL 233


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 407,481
Number of extensions: 15376
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 2
Length of query: 227
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 148
Effective length of database: 740,042
Effective search space: 109526216
Effective search space used: 109526216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 127 (53.5 bits)