BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2162.p (546 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095595|ref|YP_001100670.1| hypothetical protein HEAR2418 [... 110 2e-25 gi|134094165|ref|YP_001099240.1| putative sensor/regulator prote... 99 5e-22 gi|134093686|ref|YP_001098761.1| putative C4-dicarboxylate senso... 86 5e-18 gi|134093880|ref|YP_001098955.1| putative signal peptide [Hermin... 86 5e-18 gi|134096599|ref|YP_001101674.1| putative sensor histidine kinas... 84 2e-17 >gi|134095595|ref|YP_001100670.1| hypothetical protein HEAR2418 [Herminiimonas arsenicoxydans] Length = 313 Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 89/149 (59%), Gaps = 8/149 (5%) Query: 37 DIFFAAVEMTRMPMIVSDPRKPDNPIIFVNNAFINMTGYSSAEVVGKNCRFLQGPETDRS 96 +I AV +R ++++D R PD+P+IF N AF ++GY +++G+NCRFLQG + + Sbjct: 5 EILMQAVMESRDGILIADARAPDHPVIFANPAFEQLSGYDLEDILGRNCRFLQGTDQAQR 64 Query: 97 VVAQVRQAVAERREIATELLNYRKNGSTFWNALFISPVYDQQGELKYFFSSQLDISRRRD 156 ++ + ++ + + L NYRK+GS FWN L ISPV+DQ G L +F Q D++ R Sbjct: 65 NISILANSLEKGKHSIVTLRNYRKDGSLFWNELSISPVFDQSGVLTHFIGIQKDVTARVV 124 Query: 157 AEQALGQARKM-----EALGQLTGGIAHD 180 EQ L + R++ E L QL + HD Sbjct: 125 LEQRLRKERRLLERDKENLEQL---VVHD 150 >gi|134094165|ref|YP_001099240.1| putative sensor/regulator protein [Herminiimonas arsenicoxydans] Length = 818 Score = 99.0 bits (245), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 49/133 (36%), Positives = 79/133 (59%), Gaps = 1/133 (0%) Query: 42 AVEMTRMPMIVSDPRKPDNPIIFVNNAFINMTGYSSAEVVGKNCRFLQGPETDRSVVAQV 101 A+E P+++ D P P+I+VN AF +TGYSS E +G+NC+FLQG +TD+ + ++ Sbjct: 265 AIEACVNPIVIVDTATPGMPLIYVNGAFETITGYSSEEAIGRNCKFLQGMDTDQPELGKL 324 Query: 102 RQAVAERREIATELLNYRKNGSTFWNALFISPVYDQQ-GELKYFFSSQLDISRRRDAEQA 160 R A+ E+R + L NY K+GS F N L+I+PV D G + +F D+++ + ++ Sbjct: 325 RAAIREQRPASVLLRNYHKDGSMFLNELYIAPVSDTSGGAVGHFVGVLYDVTQIKRYQED 384 Query: 161 LGQARKMEALGQL 173 L + L L Sbjct: 385 LEHQANYDTLTGL 397 >gi|134093686|ref|YP_001098761.1| putative C4-dicarboxylate sensor protein dctS [Herminiimonas arsenicoxydans] Length = 599 Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 87/370 (23%), Positives = 157/370 (42%), Gaps = 33/370 (8%) Query: 56 RKPDNPIIFVNNAFINMTGYSSAEVVGKNCRF-LQGPETDRSVVAQVRQAVA-ERREIAT 113 R D + +VN AF M G ++ E+VG PE + VA Sbjct: 234 RDLDGRVTYVNPAFSQMVGIAAEEIVGHLPPMPYWAPEAMSEYQRRFSHVVAGTVTPQGF 293 Query: 114 ELLNYRKNGSTFWNALFISPVYDQQGELKYFFSSQLDISRR-------RDAEQALGQARK 166 E + +G +F SP+ D G+ + S LDIS R R ++ L + + Sbjct: 294 ETIFQHADGRRIPVLIFESPLVDDTGKQTGWMGSILDISDRKRVEDLNRQQQEKLQASAR 353 Query: 167 MEALGQLTGGIAHDFNNLLQVITGYLDIIHLALRSEVP-----DLGRVARSADSIRKASG 221 + +G++ +AH+ N L I+ Y L SE P ++ + ++ + + Sbjct: 354 LATMGEIASTLAHELNQPLAAISSYTTGALNLLASEQPKEATINIEMLTQALEKANAQAQ 413 Query: 222 KAAMLTQQLLAFARKQRLEGRTINLNSLTEGFTDLVQ-RTLGGDIQVRTELAPGLWNCRL 280 +A + + + F +K+ I+++ L T LV+ + + ++ ++ L Sbjct: 414 RAGQIIRSVHTFVKKREPMRTAISISELIGSVTPLVELQAQQYFVTIKVDIPAALPAVLA 473 Query: 281 DPTQMEVALLNVLINARDAMSGKGTVRIRTSNEDLSSEERALQ--AGLKPGL--YVCIAV 336 D +E LLN+ N ++M + ++ E+R L+ A + P V +++ Sbjct: 474 DQVLLEQVLLNLTRNGIESM------------QSVAPEKRILRIAAAIDPATPRNVVVSI 521 Query: 337 IDNGPGIPPEILPRVMDPFFTTKDEGKGTGLGLSMVYGFVKQSGGSVRISSGREGGTTVA 396 D G GI E+ R+ PFF+TK G G+GLS+ ++ GG++ R GGT Sbjct: 522 SDQGHGIASEVAERLYSPFFSTK--ADGMGMGLSICRTAIEFHGGTLTHVDNRGGGTIFR 579 Query: 397 IYFPATHDQV 406 PA + + Sbjct: 580 FSLPALQNNL 589 >gi|134093880|ref|YP_001098955.1| putative signal peptide [Herminiimonas arsenicoxydans] Length = 944 Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 70/132 (53%) Query: 42 AVEMTRMPMIVSDPRKPDNPIIFVNNAFINMTGYSSAEVVGKNCRFLQGPETDRSVVAQV 101 A+E + +I+ P I +VN AF +TGYS+ E +G N FL G + D+ + ++ Sbjct: 386 AIEASANSIIIISAEAPHYAIEYVNPAFERITGYSAEEAIGVNLCFLWGTDVDQPGIEEI 445 Query: 102 RQAVAERREIATELLNYRKNGSTFWNALFISPVYDQQGELKYFFSSQLDISRRRDAEQAL 161 R + RE L NYRK+G+ FW+ L+I+PV D G + +F Q DI+ + E L Sbjct: 446 RATASAEREGHAVLRNYRKDGTLFWSDLYIAPVKDDTGTVSHFIVVQYDITATKRYESEL 505 Query: 162 GQARKMEALGQL 173 +AL L Sbjct: 506 EFQTNRDALTGL 517 >gi|134096599|ref|YP_001101674.1| putative sensor histidine kinase [Herminiimonas arsenicoxydans] Length = 678 Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 117/249 (46%), Gaps = 20/249 (8%) Query: 157 AEQALGQARKMEALGQLTGGIAHDFNNLLQVITGYLDIIHLAL-RSEVPDLGRVARSADS 215 A+Q L A K+ A+G++T G+AH+ NN + V+ G LD++ L + P G + Sbjct: 446 AQQQLVLAEKLAAIGEITAGVAHEINNPVAVLQGNLDVLRDTLGAAATPVQGELRLMDQQ 505 Query: 216 IRKASGKAAMLTQQLLAFARKQRLEG--RTINLNSLTEGFTDLVQRTLG-GDIQVRTELA 272 I + + + +LL FA G I ++ + LV+ L +I+V Sbjct: 506 IHRIN----TIVTKLLQFASPGEFAGYVEAIAVDEVVVDTLVLVRHLLNQSNIEVVHNRH 561 Query: 273 PGLWNCRLDPTQMEVALLNVLINARDAMSGKGTVRIRTSNEDLSSEERALQAGLKPGLYV 332 L ++ +++ L+N+ NA AM G + I S + AG + V Sbjct: 562 ATL-AVHINRGELQQVLINLFTNAVHAMKNGGRLTIE-------SRDWIDDAGARG---V 610 Query: 333 CIAVIDNGPGIPPEILPRVMDPFFTTKDEGKGTGLGLSMVYGFVKQSGGSVRISSGREGG 392 I VID G GI E R+ D FFTTK +G GTGLGLS+ Y V + GG++ + S G Sbjct: 611 TINVIDTGAGIKKEDQARIFDAFFTTKRQG-GTGLGLSISYTLVARYGGTITVKSEEGVG 669 Query: 393 TTVAIYFPA 401 T + A Sbjct: 670 TEFTVRLLA 678 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,039,899 Number of extensions: 43032 Number of successful extensions: 211 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 207 Number of HSP's successfully gapped: 11 Length of query: 546 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 460 Effective length of database: 716,977 Effective search space: 329809420 Effective search space used: 329809420 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)