BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2161.p (233 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095847|ref|YP_001100922.1| high-affinity branched-chain am... 161 3e-41 gi|134095636|ref|YP_001100711.1| high-affinity branched-chain am... 155 2e-39 gi|134096407|ref|YP_001101482.1| high-affinity branched-chain am... 143 7e-36 gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding pro... 137 4e-34 gi|134093662|ref|YP_001098737.1| branched-chain amino acid ABC t... 125 3e-30 >gi|134095847|ref|YP_001100922.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 243 Score = 161 bits (407), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 93/219 (42%), Positives = 135/219 (61%), Gaps = 4/219 (1%) Query: 1 MSAPLLQVEGLNASYGRAHILFDLSLQVGRGEVVALMGRNGAGKSTTLKSLMGLLEGGSG 60 MSAPLL+VE L +YG +S++VG GE V ++G NGAGKS+ LK++ G+++ SG Sbjct: 1 MSAPLLKVENLCVNYGHIEAARGISIEVGEGEFVGMIGSNGAGKSSALKAIAGVVKPASG 60 Query: 61 TITFGGRDITRLAPYQRARLGLGFVPEDRRIFTELTVLQNLETG--RQPMREGAPAWTPA 118 +IT GG+ + LA ++ G+ VPE R +F + +V NL G Q R G A Sbjct: 61 SITLGGKPVQGLASHEMVHQGVALVPEGRFVFADQSVEDNLILGGFVQAQRSGVAALRDD 120 Query: 119 A--LFELFPNLGAMPHRPGGRMSGGEQQMLTIARTLMGNPHVLLLDEPSEGVAPVIVEQM 176 +F+LFP L + G +SGGEQQML IAR LM +P +LL+DE S G+AP I++ + Sbjct: 121 IDRMFQLFPRLKERRTQQAGSLSGGEQQMLVIARGLMSHPRLLLIDEVSLGLAPKILDFL 180 Query: 177 AAMIQQLKQRGMSILLCEQNTHFAGMVSDRAYLLELGRI 215 ++ L ++G+SILL EQ A V+ RAY++E G + Sbjct: 181 FPVLVDLNRQGLSILLVEQIATRALAVTSRAYVMENGNV 219 >gi|134095636|ref|YP_001100711.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 241 Score = 155 bits (391), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 87/232 (37%), Positives = 136/232 (58%), Gaps = 13/232 (5%) Query: 1 MSAPLLQVEGLNASYGRAHILFDLSLQVGRGEVVALMGRNGAGKSTTLKSLMGLLEGG-- 58 M+ +L++ GL +YG + + L V +GE++ L+G NGAGK+TTLK++ G L Sbjct: 1 MTTTVLKIAGLKVAYGGIQAVKGIDLDVRQGELITLIGANGAGKTTTLKAITGTLPECRV 60 Query: 59 SGTITFGGRDITRLAPYQRARLGLGFVPEDRRIFTELTVLQNLETG------RQPMREGA 112 G I + G+ I L ++ R L VPE R +FT +++ +NL G +Q + + Sbjct: 61 DGHIEYAGQAIKGLGSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTRNDKQGIADDM 120 Query: 113 PAWTPAALFELFPNLGAMPHRPGGRMSGGEQQMLTIARTLMGNPHVLLLDEPSEGVAPVI 172 W F +FP L + G +SGGEQQML +AR LM +P +LLLDEPS G++P++ Sbjct: 121 EKW-----FAVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPQLLLLDEPSMGLSPIM 175 Query: 173 VEQMAAMIQQLKQRGMSILLCEQNTHFAGMVSDRAYLLELGRIVHHGSVEQV 224 VE++ +I+ + +G++ILL EQN A + RAY++E G I G +Q+ Sbjct: 176 VEKIFEVIRSVAAQGITILLVEQNARLALQAAHRAYVMESGLITMQGDAQQM 227 >gi|134096407|ref|YP_001101482.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 143 bits (361), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 132/225 (58%), Gaps = 1/225 (0%) Query: 6 LQVEGLNASYGRAHILFDLSLQVGRGEVVALMGRNGAGKSTTLKSLMGLLEGGSGTITFG 65 L V+GL Y + ++L D+S++V G++ ++G NGAGKST ++S++GL G I + Sbjct: 4 LSVKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEILWN 63 Query: 66 GRDITRLAPYQRARLGLGFVPEDRRIFTELTVLQNLETGRQPMREGAPAWTPAA-LFELF 124 GR++ + G+ +PE R++F ++V +NL G + A A ++E+F Sbjct: 64 GRNLAGEKTHAIIASGISCIPEGRKVFPRMSVAENLALGAFLVTNSAVVRERLARVYEIF 123 Query: 125 PNLGAMPHRPGGRMSGGEQQMLTIARTLMGNPHVLLLDEPSEGVAPVIVEQMAAMIQQLK 184 P L + G MSGGEQ M++I R LM P +L++DEPS G++P+ V++ +I+++ Sbjct: 124 PRLKERAAQLAGTMSGGEQAMVSIGRGLMAEPQLLVIDEPSLGLSPLYVKENFNVIRRIN 183 Query: 185 QRGMSILLCEQNTHFAGMVSDRAYLLELGRIVHHGSVEQVQAHQQ 229 G+++LL EQN +S Y+L GR++ G+ E++ ++ Sbjct: 184 ALGITVLLVEQNARQTLAISHYGYVLSQGRVMAEGTAEELASNDD 228 >gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 246 Score = 137 bits (346), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 133/234 (56%), Gaps = 7/234 (2%) Query: 1 MSAPLLQVEGLNASYGRAHILFDLSLQVGRGEVVALMGRNGAGKSTTLKSLMGLLEGGSG 60 MS+ L+ V GL SYG ++ D++LQV GEV+ L+G NGAGK+T+ ++GL+ +G Sbjct: 1 MSSKLI-VSGLQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAG 59 Query: 61 TITFGGRDITRLAPYQRARLGLGFVPEDRRIFTELTVLQNLETGRQPMREGAPAWTPAAL 120 I G DI+R ++RA+LGL ++P++ +F +L+V N+ + R A + + Sbjct: 60 RIELDGVDISRQPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKALSKEQI 119 Query: 121 FELFPNLGA------MPHRPGGRMSGGEQQMLTIARTLMGNPHVLLLDEPSEGVAPVIVE 174 + L A + +SGGE++ + IAR L NP +LLDEP GV P+ V Sbjct: 120 EQRLDTLLADLQIEKLRENQALSLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVI 179 Query: 175 QMAAMIQQLKQRGMSILLCEQNTHFAGMVSDRAYLLELGRIVHHGSVEQVQAHQ 228 ++ +++ LK+RG+ +L+ + N + DRAY++ G ++ G + + A + Sbjct: 180 EIQRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGAVLASGRPDDIIADE 233 >gi|134093662|ref|YP_001098737.1| branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 125 bits (313), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 82/231 (35%), Positives = 128/231 (55%), Gaps = 19/231 (8%) Query: 6 LQVEGLNASYGRAHILFDLSLQVGRGEVVALMGRNGAGKSTTLKSLMGLLEGGSGTITFG 65 L +E +N +L D+S+ + GE+V L+GRNGAGKSTT +S+MG SG I + Sbjct: 3 LALENVNVILAGNPVLRDISMHIEPGELVCLVGRNGAGKSTTFRSIMGFQPLKSGAIKWK 62 Query: 66 GRDITRLAPYQRARLGLGFVPEDRRIFTELTVLQNLETGRQPMREGAPAWTPAA------ 119 I + ++ LGLG+ PE +F +LTV N+ P WT + Sbjct: 63 RSAINGMQTHKIVELGLGYTPEGSDVFGDLTVEDNI---------ALPTWTRKSGRSAQE 113 Query: 120 ----LFELFPNLGAMPHRPGGRMSGGEQQMLTIARTLMGNPHVLLLDEPSEGVAPVIVEQ 175 + +FP L HR G ++SGGE++M++IAR L +P +LLLDE EG++P I+ Sbjct: 114 RIDEAYAVFPKLKQYLHRGGQQLSGGERKMVSIARALALDPELLLLDEAFEGLSPAIIPT 173 Query: 176 MAAMIQQLKQRGMSILLCEQNTHFAGMVSDRAYLLELGRIVHHGSVEQVQA 226 ++ +Q + ++G +LL E N + +DR Y++E G IV G++ Q +A Sbjct: 174 ISEGLQSILKQGRGVLLAESNFYHLPPFADRLYVIERGEIVFEGTLAQAEA 224 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 463,371 Number of extensions: 20338 Number of successful extensions: 200 Number of sequences better than 1.0e-08: 46 Number of HSP's gapped: 150 Number of HSP's successfully gapped: 48 Length of query: 233 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 154 Effective length of database: 740,042 Effective search space: 113966468 Effective search space used: 113966468 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)