BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2160.p (256 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095848|ref|YP_001100923.1| high-affinity branched-chain am... 164 3e-42 gi|134095637|ref|YP_001100712.1| high-affinity branched-chain am... 162 2e-41 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 147 8e-37 gi|134093663|ref|YP_001098738.1| putative branched-chain amino a... 129 2e-31 gi|134096408|ref|YP_001101483.1| high-affinity branched-chain am... 127 6e-31 >gi|134095848|ref|YP_001100923.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 608 Score = 164 bits (416), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 98/257 (38%), Positives = 147/257 (57%), Gaps = 8/257 (3%) Query: 2 SLLQVQTISKSFGGVAALDAVSFDLPAGQMLALIGPNGAGKSTCFNVINGQLRPDAGAVL 61 + LQ + ++ +FGG+ A D VS L AG + ++IGPNGAGKST N ++G RP +G++ Sbjct: 346 TCLQTKDMTMAFGGLIANDKVSEVLKAGTVHSVIGPNGAGKSTFINCVSGFYRPTSGSIE 405 Query: 62 LDGHDIAGLDARRIWRRGVGRTFQVSAAFASLTVLENVQAALLSHRRR--LWQLWRPAAH 119 G + ++ R G+ RTFQ + F +T LENV S R L R ++ Sbjct: 406 FMGQIATAKQSHQLARMGLARTFQNTELFGDMTCLENVLVGADSRYRSGLFATLLRLPSY 465 Query: 120 CLRQ-----EAMHLLDQVGMSAQAERACGVLAYGDIKRVELAMALSNDPRLLLMDEPTAG 174 + EA LL+ VG+ AE L +G +R+E+A AL+ P+LLL+DEP AG Sbjct: 466 FHDERRYAAEARCLLEYVGLDDYAEEKARNLPFGHQRRLEIARALAMSPKLLLLDEPAAG 525 Query: 175 MAARERQELMALTRRLVSQRGLSVLFTEHSMDVVFAFADRIIVLARGQVIAQGDAQDVRQ 234 + E ++LM L R L S + ++VL EH +D++ A +D + VL G+VIA G +VR Sbjct: 526 LTHGEIEDLMKLIRNLASHQ-ITVLLVEHHVDMIMAVSDHVTVLDYGKVIASGTVAEVRS 584 Query: 235 DARVREVYFGSGASFGH 251 + V E YFG+G + G+ Sbjct: 585 NPAVIEAYFGTGETKGN 601 >gi|134095637|ref|YP_001100712.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 260 Score = 162 bits (409), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 98/251 (39%), Positives = 139/251 (55%), Gaps = 12/251 (4%) Query: 3 LLQVQTISKSFGGVAALDAVSFDLPAGQMLALIGPNGAGKSTCFNVINGQLRPDAGAVLL 62 +L + +SK FGG+ AL V+ + GQ+ LIGPNGAGK+T FNVI G + D+G+ L Sbjct: 10 ILNIANVSKRFGGLQALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADSGSFEL 69 Query: 63 DGHDIAGLDARRIWRRGVGRTFQVSAAFASLTVLENVQAALLSHRRRLWQLWRPAAH--- 119 G + + + G+ RTFQ F +T LENV H R L+ H Sbjct: 70 AGKAYSPSAPHLVAKAGIARTFQNIRLFGEMTALENVMVG--RHVRTHQGLFGAVFHHKA 127 Query: 120 ------CLRQEAMHLLDQVGMSAQAERACGVLAYGDIKRVELAMALSNDPRLLLMDEPTA 173 +R AM LLD VG++ A R L+YGD +R+E+A AL+ DP+LL +DEP A Sbjct: 128 ARQEEAAIRARAMELLDFVGIAQFAGRTARHLSYGDQRRLEIARALATDPQLLALDEPAA 187 Query: 174 GMAARERQELMALTRRLVSQRGLSVLFTEHSMDVVFAFADRIIVLARGQVIAQGDAQDVR 233 GM A E+ L L ++ ++ G ++L EH + +V DRI VL G+ IA+G DV+ Sbjct: 188 GMNATEKLGLRELLVKIKAE-GKTILLIEHDVKLVMGLCDRITVLDYGKPIAEGVPADVQ 246 Query: 234 QDARVREVYFG 244 ++ V E Y G Sbjct: 247 KNPAVIEAYLG 257 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 147 bits (370), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 86/239 (35%), Positives = 133/239 (55%), Gaps = 7/239 (2%) Query: 4 LQVQTISKSFGGVAALDAVSFDLPAGQMLALIGPNGAGKSTCFNVINGQLRPDAGAVLLD 63 ++V+ I+K FG AL+ VS + PAG++ AL+GP+G GK+T +I G +PD G VLLD Sbjct: 3 IEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 64 GHDIAGLDARRIWRRGVGRTFQVSAAFASLTVLENVQAALLSHRRRLWQLWRPAAHCLRQ 123 G D + AR + R VG FQ A F +TV EN+ L R RP+ +++ Sbjct: 63 GEDAS---ARHVRERQVGFVFQHYALFKHMTVFENIAFGL----RVRPAATRPSESVIKE 115 Query: 124 EAMHLLDQVGMSAQAERACGVLAYGDIKRVELAMALSNDPRLLLMDEPTAGMAARERQEL 183 + LL+ V + A+R L+ G +R+ LA AL+ +PR+LL+DEP + A+ R+EL Sbjct: 116 KVTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKEL 175 Query: 184 MALTRRLVSQRGLSVLFTEHSMDVVFAFADRIIVLARGQVIAQGDAQDVRQDARVREVY 242 RRL + ++ +F H + AD+I+++ +G V G +DV + VY Sbjct: 176 RRWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPFVY 234 >gi|134093663|ref|YP_001098738.1| putative branched-chain amino acid ABC transporter, ATP-binding protein [Herminiimonas arsenicoxydans] Length = 255 Score = 129 bits (323), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 74/248 (29%), Positives = 130/248 (52%), Gaps = 3/248 (1%) Query: 3 LLQVQTISKSFGGVAALDAVSFDLPAGQMLALIGPNGAGKSTCFNVINGQLRPDAGAVLL 62 LLQ Q IS+ +G AL V + G+ ++++GPNGAGK+T NV+ G +P G V Sbjct: 7 LLQAQQISRHYGDFIALHNVDLSVSRGEFVSVVGPNGAGKTTLVNVLTGLHQPTTGNVHF 66 Query: 63 DGHDIAGLDARRIWRRGVGRTFQVSAAFASLTVLENVQAALLSHRRRLWQLWRP--AAHC 120 +G +IAG+ A + RG+ R FQ+++ F LTV E + + S+ W + + Sbjct: 67 NGSNIAGVGAVDLATRGLARAFQLTSIFPELTVRETIAVSACSYLNMRWNGFGSLFGSRK 126 Query: 121 LRQEAMHLLDQVGMSAQAERACGVLAYGDIKRVELAMALSNDPRLLLMDEPTAGMAARER 180 + + D G++ + L +G K +++A A + P+++L+DEPTAG++ ++ Sbjct: 127 VNDIVVRTADAFGLAPWLDTKGSSLPHGRRKLLDVASAFALHPKVMLLDEPTAGVSTADK 186 Query: 181 QELMALTRRLVSQRGL-SVLFTEHSMDVVFAFADRIIVLARGQVIAQGDAQDVRQDARVR 239 +M R G+ +++ EH MD+V ++ RII + G+ IA + + + Sbjct: 187 HGVMETLLRAAKHMGIEAIMLVEHDMDLVSRYSTRIIAMQAGKKIADLPRDEFFANEEII 246 Query: 240 EVYFGSGA 247 + G GA Sbjct: 247 SIVVGKGA 254 >gi|134096408|ref|YP_001101483.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 276 Score = 127 bits (319), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 82/253 (32%), Positives = 138/253 (54%), Gaps = 10/253 (3%) Query: 2 SLLQVQTISKSFGGVAALDAVSFDLPAGQMLALIGPNGAGKSTCFNVINGQLRPDAGAVL 61 SL+ + ++ FGG+ ALD ++ + G++L L+GPNG+GK+T FNV+ G + +G+++ Sbjct: 21 SLVSARDLTMRFGGLTALDQLNLHIVEGEVLGLLGPNGSGKTTFFNVLTGLYKASSGSII 80 Query: 62 LDGHDIAGLDARRIWRRGVGRTFQVSAAFASLTVLENVQAALLSHRRR--LWQLWRPA-- 117 G ++ G + I+R GV RTFQ S LTV +N+ H + + L+R Sbjct: 81 YQGREVIGQTPQEIYRSGVARTFQRSRLSLPLTVFDNIVIGDYQHMQHGLFFNLFRRKAF 140 Query: 118 -----AHCLRQEAMHLLDQVGMSAQAERACGVLAYGDIKRVELAMALSNDPRLLLMDEPT 172 A+ + EA+ + + A+ + D +R+E+ AL ++PRLLL+DEP+ Sbjct: 141 RAEYDAYVAKVEALLHIFSPPLVARMFEPVETFSMIDRRRIEVCRALLSEPRLLLLDEPS 200 Query: 173 AGMAARERQELMALTRRLVSQ-RGLSVLFTEHSMDVVFAFADRIIVLARGQVIAQGDAQD 231 AGM E + LM ++ ++ L+V+ EH M+V+ DR IV G+ IA+G + Sbjct: 201 AGMTHDETEALMDDILQVRNKLSNLTVVLIEHEMNVIKRITDRCIVFNYGKKIAEGTYAE 260 Query: 232 VRQDARVREVYFG 244 + D V+ Y G Sbjct: 261 ITADPNVQTAYLG 273 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.324 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 475,656 Number of extensions: 18527 Number of successful extensions: 243 Number of sequences better than 1.0e-08: 43 Number of HSP's gapped: 181 Number of HSP's successfully gapped: 45 Length of query: 256 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 176 Effective length of database: 736,747 Effective search space: 129667472 Effective search space used: 129667472 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 127 (53.5 bits)