BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2158.p (404 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093666|ref|YP_001098741.1| hypothetical protein HEAR0390 [... 111 6e-26 gi|134094935|ref|YP_001100010.1| putative extracellular ligand-b... 66 3e-12 gi|134094329|ref|YP_001099404.1| putative Leu/Ile/Val/Thr-bindin... 62 4e-11 gi|134095850|ref|YP_001100925.1| putative ABC-type branched-chai... 62 4e-11 >gi|134093666|ref|YP_001098741.1| hypothetical protein HEAR0390 [Herminiimonas arsenicoxydans] Length = 429 Score = 111 bits (278), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 90/310 (29%), Positives = 156/310 (50%), Gaps = 18/310 (5%) Query: 52 RGWEMALDEVNAAGGVLGKKLEVIARDDNGNPGDSVRVAEELMARERVALLFGGFLSNTG 111 RG E +NAAGG+ G+K+E++ +++ +P D++ +L+ +E+V + G S Sbjct: 61 RGVEWTTARINAAGGIGGRKVELVIQEET-SPKDTIDRFRKLVLQEKVDCVQGIVSSGVS 119 Query: 112 LALTDYAKQHKVFFLAAEPLTDKIVWQNGNKYTYRLRPSTTMLVAAVVKEAVKLKK---- 167 LAL A+ ++ + + T V + K Y R ST AV+ + +K Sbjct: 120 LALAPAAEDSRMPTIFWDGTTQDGVKETMPKPKYVFR-STDNECEAVMASLLAIKHFKGK 178 Query: 168 -KRWAIVYPNYEYGQSAVASFKAMMKQAQPDIEFVAEQAPPLGKIDAGAVTQALADAKPE 226 KR A V P+Y YG++ +F+A++K+ + E V+EQ +G +D + AL AKP+ Sbjct: 179 FKRIACVNPDYSYGRNTWTAFQALLKKYGIEHEVVSEQWSKIGNLDLTSNVAALKAAKPD 238 Query: 227 AIFNALFAADLGKFVREGNTRGLFDNVEVVSLLTGEPEYLDPLKSEAPQNWIVTGYPWYA 286 IF++L ADL F+++ + GL + V G +K E IV G+ Sbjct: 239 LIFSSLLFADLPVFMKQAHNAGLTEGTRFVLPAAGWQH--TAMKKEFTPEGIVWGHNTMY 296 Query: 287 INTPE----HKKFVEAYRKKYNDYPRNGSLVGYSALMSIAAGIKKAGSTDA-----DKLS 337 + P+ K+FV+ Y KY DYP + Y ++M AG++KA + +++ Sbjct: 297 FDDPKASATQKEFVKWYADKYKDYPHWEADRAYFSMMVYKAGVEKALAAKKSWPTPEEIC 356 Query: 338 AAFSGLKVDT 347 AA G++V++ Sbjct: 357 AAIPGVQVES 366 >gi|134094935|ref|YP_001100010.1| putative extracellular ligand-binding receptor [Herminiimonas arsenicoxydans] Length = 426 Score = 66.2 bits (160), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 82/330 (24%), Positives = 139/330 (42%), Gaps = 13/330 (3%) Query: 23 SGIALAQDSIKIG----EINSYKAQPAFLEPYRRGWEMALDEVNAAGGVLGKKLEVIARD 78 SG+A D I +G + Y A A E R WE +VN GG+LGK++++ D Sbjct: 61 SGLARPADIIHLGVTVSKTGKYAALGAMNEKAYRLWER---DVNRRGGLLGKQVKITMLD 117 Query: 79 DNGNPGDSVRVAEELMARERVALLFGGFLSNTGLALTDYAKQHKVFFLAAEPLTDKIVWQ 138 D + + +L+ ++V L+ G + S+ A+ + + H++ LA+ D I WQ Sbjct: 118 DKSEADLAGNLYRKLIIDDKVDLVLGPYSSDLTEAVANITELHRMPLLASGASADSI-WQ 176 Query: 139 NGNKYTYRLRPSTTMLVAAVVKEAVKLKKKRWAIVYPNYEYGQSAVASFKAMMKQAQPDI 198 G Y + + +++ ++ VK R AIV + + QS K+ + + Sbjct: 177 QGRNYVFGIYVTSSKYSVGFLELLVKSGINRIAIVAADDSFSQSISIGTAEWAKRYE--L 234 Query: 199 EFVAEQAPPLGKIDAGAVTQALADAKPEAIFNALFAADLGKFVREGNTRGLFDNVEVVSL 258 + V G D QA A EA+ A D R G ++ Sbjct: 235 QMVLSATFKKGSADIRDSIQAARLAGAEAVIVAGHFDDAVNGRRALKDIGWTPKAYYATV 294 Query: 259 LTGEPEYLDPLKSEAPQNWIVTGYPWY-AINTPEHKKFVEAYRKKYNDYPRNGSLVGYSA 317 ++ D LK +A N+ + W + P ++F ++R++Y P + Y+A Sbjct: 295 GPAIQKFSDTLKDDA--NYTYSTSQWEPTLPYPGAREFALSFREEYGILPSYHAASAYAA 352 Query: 318 LMSIAAGIKKAGSTDADKLSAAFSGLKVDT 347 + A I+K S D +KL A S L T Sbjct: 353 GQILEAAIRKIKSIDREKLRHALSRLDAIT 382 >gi|134094329|ref|YP_001099404.1| putative Leu/Ile/Val/Thr-binding protein [Herminiimonas arsenicoxydans] Length = 373 Score = 62.4 bits (150), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 86/193 (44%), Gaps = 11/193 (5%) Query: 4 FNFQRGLLWAGVATILNFSSGIALAQDSIKIGE-INSYKAQPAFLEPYRRGWEMALDEVN 62 F F R A A ++ S+ A ++I IG+ I+ A Y G + D +N Sbjct: 3 FLFLRSCSVASAAFLI--SAAAFSADETIVIGQAIDLSSPNAAIGRDYVAGIKTYFDALN 60 Query: 63 AAGGVLGKKLEVIARDDNGNPGDSVRVAEELMARERVALLFGGFLSNTGLALTD---YAK 119 AAGG+ GKK+ I RDD P +V+V EL+ RE+V L GG A+ + + + Sbjct: 61 AAGGIAGKKIRYIVRDDQATPAVAVKVVSELIEREQVDFLLGGVGDKVTQAVLNAPAFKR 120 Query: 120 QHKVFFLAAEPLTDKIVWQNGNKYTYRLRPSTTMLVAAVVKEAVKLKKKRWAIVYPNYEY 179 + V F PL D V N N+ + RP+ V ++ L IVY + Sbjct: 121 SNLVLF---APLVDA-VELNDNRALF-WRPTYLQEVRHILSHFAPLGITNVGIVYQDGPS 175 Query: 180 GQSAVASFKAMMK 192 Q A S + ++ Sbjct: 176 TQQAFRSVSSELR 188 >gi|134095850|ref|YP_001100925.1| putative ABC-type branched-chain amino acid transport systems [Herminiimonas arsenicoxydans] Length = 397 Score = 62.0 bits (149), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 85/306 (27%), Positives = 131/306 (42%), Gaps = 31/306 (10%) Query: 53 GWEMALDEVNAAGGVLGKKLEVIARDDNGNPGDSV----RVAEELMARERVALLFGGFLS 108 G E+A+DE+NA GGVLG+KL ++ DD G P V RVA MA +A+L GG+ S Sbjct: 55 GAEVAIDEINAKGGVLGQKLSLVKYDDAGQPPKGVDNTRRVA---MANNCIAIL-GGYHS 110 Query: 109 NTGLALTDYAKQHKVFFLAAEPLTDKIVWQNG--NKYTYRLRPSTTMLVAAVVKEAVKLK 166 LA + +Q + ++ A KI+ + N + +R+ + A + A+ Sbjct: 111 GVALAQREAVEQIGIPYIGAFAAGTKIIEPDTGVNNWMFRVSAKDRWVAAYLSDVALAHS 170 Query: 167 -KKRWAIVYPNYEYGQSAVASFKAMMKQAQPDIEFVAEQAPPLGKIDAGAVTQALADAKP 225 K+ AI Y N +G A KA ++ ++ VA + G D A DA Sbjct: 171 PGKKVAIFYENTGWGNGAAPDVKAALE--ARGVKPVAMETFNWGDQDMTAQLMRARDAGA 228 Query: 226 EAIFNALFAADLGKFVREGNT--RGL--FDNVEVVSLLTGEPEYLDPLKSEAPQN-WIVT 280 EAI +F D REGN RG+ + ++ G L L ++ Sbjct: 229 EAIV--MFGLD-----REGNQILRGMDKLNYKPAIASAWGLAGNLGELAGPLANGVFVFQ 281 Query: 281 GYPWYAINTPEHKKFVEAYRKKY------NDYPRNGSLVGYSALMSIAAGIKKAGSTDAD 334 + W + +A KKY + +G+ Y A+ +A I+ AGS D Sbjct: 282 TFSWMGKQDAKTAAVYDALAKKYKLKAPADLKAGSGTANAYDAIHILAKAIEAAGSFDRV 341 Query: 335 KLSAAF 340 K+ A Sbjct: 342 KVRDAL 347 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.317 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 779,324 Number of extensions: 32173 Number of successful extensions: 95 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 89 Number of HSP's successfully gapped: 4 Length of query: 404 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 320 Effective length of database: 723,567 Effective search space: 231541440 Effective search space used: 231541440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)