BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2157.p
         (178 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095864|ref|YP_001100939.1| putative two-component response...   284   2e-78
gi|134095798|ref|YP_001100873.1| OmpR family response regulator ...    59   1e-10
gi|134096598|ref|YP_001101673.1| two-component regulatory system...    54   4e-09
gi|134095857|ref|YP_001100932.1| two-component regulatory system...    54   5e-09

>gi|134095864|ref|YP_001100939.1| putative two-component response
           regulator [Herminiimonas arsenicoxydans]
          Length = 178

 Score =  284 bits (726), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 140/178 (78%), Positives = 152/178 (85%)

Query: 1   MPADRLLLIIEDDAAFARTLGRSFERRGYTVLLAANQEEAAAHLKDHHPGYAVVDLKLGG 60
           M  +R LLIIEDD AFARTLGRSFERR Y VLLA++Q+EAAA L+   P YAVVDLKL G
Sbjct: 1   MSVERTLLIIEDDGAFARTLGRSFERRNYRVLLASSQDEAAALLQQEKPAYAVVDLKLNG 60

Query: 61  NASGLACVQMLHAHDEHMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFGHV 120
           + SGLACVQMLH HD  M IVVLTGFAS+ TAVEAIKLGACQYLAKPSNTDDIEAAFGHV
Sbjct: 61  HTSGLACVQMLHKHDPAMQIVVLTGFASLNTAVEAIKLGACQYLAKPSNTDDIEAAFGHV 120

Query: 121 AGVAELELPARATSIKTLEWERIHEVLVDTDFNISETARRLGMHRRTLARKLEKQRVK 178
           AG  ++EL  R+TSIKTLEWE IH VL ++DFNISE ARRLGMHRRTLARKLEKQRVK
Sbjct: 121 AGNVDVELGNRSTSIKTLEWEHIHAVLAESDFNISEAARRLGMHRRTLARKLEKQRVK 178


>gi|134095798|ref|YP_001100873.1| OmpR family response regulator
           [Herminiimonas arsenicoxydans]
          Length = 233

 Score = 58.9 bits (141), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 6/166 (3%)

Query: 7   LLIIEDDAAFARTLGRSFERRGYTVLLAANQEEAAAHLKDHHPGYAVVDLKLGGNASGLA 66
           +L+ EDD+  A  L RS  + GY      N  EA + L        ++DL L    SGL 
Sbjct: 3   ILLAEDDSVLADGLTRSLRQSGYVTDCVKNGVEADSALSTQDFDLLILDLGLP-KMSGLE 61

Query: 67  CVQMLHAHDEHMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFGHVAGVAEL 126
            +Q L A +  + +++LT   SI   V+ + LGA  ++AKP    ++EA    V  +   
Sbjct: 62  VLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEA---RVRALTRR 118

Query: 127 ELPARATSIK--TLEWERIHEVLVDTDFNISETARRLGMHRRTLAR 170
                 T IK   L ++++  +    D  +  +AR LG+    L R
Sbjct: 119 GAGGGPTVIKHGPLSYDQVGRIAYINDQMLELSARELGLLEVLLQR 164


>gi|134096598|ref|YP_001101673.1| two-component regulatory system
           response regulator [Herminiimonas arsenicoxydans]
          Length = 474

 Score = 53.9 bits (128), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 1/115 (0%)

Query: 4   DRLLLIIEDDAAFARTLGRSFERRGYTVLLAANQEEAAAHLKDHHPGYAVVDLKLGGNAS 63
           D+ +LI++D+      L R+ E R   V    + E A+  L   H    ++D  L G  S
Sbjct: 36  DQSILIVDDEPGMRSFLQRTLEDRCSRVEAVDSVEAASVLLDSRHFDLIILDNSLPGK-S 94

Query: 64  GLACVQMLHAHDEHMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFG 118
           G+  +  + A   H  +V++T FA + TA+ A++ GA  +L KP   + I +A G
Sbjct: 95  GVEWLHEMRALGLHNDVVLITAFADLETAIHALRAGAADFLLKPFRVNQILSAIG 149


>gi|134095857|ref|YP_001100932.1| two-component regulatory system
           response regulator [Herminiimonas arsenicoxydans]
          Length = 229

 Score = 53.5 bits (127), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 1/109 (0%)

Query: 7   LLIIEDDAAFARTLGRSFERRGYTVLLAANQEEAAAHLKDHHPGYAVVDLKLGGNASGLA 66
           +LI+EDDA  A  L R+  + GY V  A N E+A   L +      ++D+ L     GLA
Sbjct: 3   ILIVEDDAVLAAALTRALTQAGYAVDYADNGEDANRALSNDAYALVLLDIAL-PKMDGLA 61

Query: 67  CVQMLHAHDEHMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEA 115
            ++ L      + +++LT   ++   V  + LGA  Y+ KP +  + EA
Sbjct: 62  VLRRLRERKSRVPVLILTARDTLDDRVAGLDLGADDYMTKPFDLLEFEA 110


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 333,419
Number of extensions: 12466
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 4
Length of query: 178
Length of database: 1,000,347
Length adjustment: 76
Effective length of query: 102
Effective length of database: 749,927
Effective search space: 76492554
Effective search space used: 76492554
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)