BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2156.p (453 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095865|ref|YP_001100940.1| putative two-component sensor [... 552 e-158 gi|134095107|ref|YP_001100182.1| putative oxidative stress resis... 64 2e-11 gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two... 55 6e-09 >gi|134095865|ref|YP_001100940.1| putative two-component sensor [Herminiimonas arsenicoxydans] Length = 449 Score = 552 bits (1423), Expect = e-158, Method: Compositional matrix adjust. Identities = 273/421 (64%), Positives = 322/421 (76%) Query: 25 QNPAGHQNMLLLIQLRWLAVLGQVSTIAFVVLVFELPLPLPHMLEVLSCLIAFNIASHLR 84 ++ AG +NM+LLIQLRW+AV+GQ++TIA V L F + L LP+MLEVL+CLIAFNIASHLR Sbjct: 25 EHSAGRKNMMLLIQLRWIAVIGQITTIAIVTLGFGIQLQLPYMLEVLACLIAFNIASHLR 84 Query: 85 WHERRIATNAELFLALLVDVAVLTFQLYLSGGITNPFAFLYLMQIILSAVLLKPWSSWAI 144 WHER + +N ELF ALLVDVA LT QLY SGGITNPFAF YL+Q+ILSAVLL+ WS+W I Sbjct: 85 WHERSMVSNNELFFALLVDVASLTLQLYFSGGITNPFAFAYLLQVILSAVLLEAWSTWII 144 Query: 145 VGVTMLCLAGLALFSEPLPLPPDHNAGLLSLYVEGTLICFLLNAGLMVFFITRISSNLRA 204 V VT CLAGLA + PL LP DH+ SLYV+G LICF+LNA L+ FITRI N A Sbjct: 145 VAVTSACLAGLAAHANPLILPHDHSLRFFSLYVQGILICFVLNAVLLTAFITRIRRNFHA 204 Query: 205 GDALLADLRQRAAEEDHIVRMGLLASGAAHELGTPLATVSVILGDWKRMPEISQRPDMLD 264 GD LA LRQRA EE+HIVRMGLLASGAAHELGTPLATVSVILGDW+RMP ++ D+ Sbjct: 205 GDVELAALRQRAVEEEHIVRMGLLASGAAHELGTPLATVSVILGDWRRMPVVAASADLQQ 264 Query: 265 DISEMEAQLQRCKSIVSGVLLSAGQARGESSIKTTLNTFLDSVAEDWRKTRPVEVFEYRN 324 DI+EMEAQLQRCKSIVSG+LLSAG+ RGESS +TT+ TFLD +A WR +RP+ +F Y N Sbjct: 265 DIAEMEAQLQRCKSIVSGILLSAGETRGESSAQTTIVTFLDDLAAAWRASRPIAIFLYEN 324 Query: 325 LIEQDVPVAFDSAIKQMLGNVLDNAFEVSPQWLALQVRREGDLLLMEVSDQGPGFPDWMI 384 IE D+ V FDS +KQ + N+LDNA E SPQWL L D L++EVSD GPGF ++ Sbjct: 325 RIEHDLAVVFDSTLKQTIFNLLDNALEASPQWLRLTASSNEDTLIIEVSDAGPGFLPEIL 384 Query: 385 NQIGKPYQSTKGKPGRGLGLFFVVNVARKLGGRVWASNIDGGGARVTLELPLSAISLESG 444 +G PYQSTK + G GLGLF V+NVAR LGG V A N + GGA V L LPL+AI E Sbjct: 385 ANLGTPYQSTKNRVGGGLGLFLVMNVARTLGGTVTARNREEGGAVVQLSLPLAAIMYEEE 444 Query: 445 E 445 E Sbjct: 445 E 445 >gi|134095107|ref|YP_001100182.1| putative oxidative stress resistance two-coponent transmembrane sensor histidine kinase transcription regulator [Herminiimonas arsenicoxydans] Length = 455 Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 107/217 (49%), Gaps = 25/217 (11%) Query: 230 SGAAHELGTPLATVSVILGDWKRMPEISQRPDMLDDISEMEAQLQRCKSIVSGVLLSAGQ 289 +G +H+L TPLA + + + E++ PD D M++ L++ +I+ G L + Sbjct: 240 AGISHDLRTPLARMQLEV-------EMAGLPD--DARKGMQSDLEQMDAII-GQFLDYAK 289 Query: 290 ARGESSIKTT-LNTFLDSVAEDWRKTRPVEVFEYRNLIEQDVPVAFDS-AIKQMLGNVLD 347 S K+ L L A + + V+V + +E V V ++ IK+++ N+++ Sbjct: 290 PVDSSHFKSVDLTALLSEAAHEAARLPDVQVHPF---MEDKVTVLGNAIDIKRVVNNLVE 346 Query: 348 NAFEVSPQWLALQV------RREGDLLLMEVSDQGPGFPDWMINQIGKPY---QSTKGKP 398 NA A V R EGD +++E++D G G P I ++ +P+ S +G+ Sbjct: 347 NARRYGKATDAHHVDIDICCRIEGDKVMLEIADHGAGVPAEEIARLLRPFTRMDSARGQA 406 Query: 399 -GRGLGLFFVVNVARKLGGRVWASNIDGGGARVTLEL 434 G GLGL V + ++ GG++ N DGGG V + L Sbjct: 407 NGAGLGLAIVDRIVKRHGGKLHLFNRDGGGLTVQIVL 443 >gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation [Herminiimonas arsenicoxydans] Length = 921 Score = 55.5 bits (132), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 101/232 (43%), Gaps = 15/232 (6%) Query: 219 EDHIVRM------GLLASGAAHELGTPLATVSVILGDWKRMPEISQRPDMLDDISEMEAQ 272 +D +VRM L S +H+L TPL ++ V L + M + + + + Sbjct: 673 QDALVRMESERLRNSLLSALSHDLRTPLTSL-VGLSESLTMSKPPLTSSQQELAQALHDE 731 Query: 273 LQRCKSIVSGVLLSAGQARGESSIKTTLNTFLDSVAEDWRKTRP-VEVFEYRNLIEQDVP 331 +R ++VS +L A GE F + V R ++ + E + + D+P Sbjct: 732 ARRMSNLVSNLLDMARIQSGEVKFNLQWLQFEEVVGSALRASQSAIAHHEIKTRLAPDLP 791 Query: 332 -VAFDSA-IKQMLGNVLDNAFEVSPQWLALQVRRE--GDLLLMEVSDQGPGFPDWMINQI 387 V FD+ I+++L N+++NA + +P + + E G L + V D GPG P I Sbjct: 792 LVRFDAVLIERVLCNLIENAAKYTPAGSRIVIAAEISGRFLEVSVYDNGPGLPAGQEEAI 851 Query: 388 GKPY---QSTKGKPGRGLGLFFVVNVARKLGGRVWASNIDGGGARVTLELPL 436 + + PG GLGL + G + A++ GGA + LPL Sbjct: 852 FDKFTRGERESATPGVGLGLAICRAIVEAHQGTIRAAHSPDGGASINFTLPL 903 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.138 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 802,362 Number of extensions: 30227 Number of successful extensions: 145 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 151 Number of HSP's successfully gapped: 3 Length of query: 453 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 368 Effective length of database: 720,272 Effective search space: 265060096 Effective search space used: 265060096 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)