BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2155.p
         (283 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095866|ref|YP_001100941.1| SURF1 family protein [Herminiim...   263   9e-72

>gi|134095866|ref|YP_001100941.1| SURF1 family protein
           [Herminiimonas arsenicoxydans]
          Length = 265

 Score =  263 bits (671), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 146/273 (53%), Positives = 183/273 (67%), Gaps = 13/273 (4%)

Query: 1   MSPTPPHGVTQGKESGTASAVPVSRTKASLLLLTLLAGFFFLVFAALGTWQVYRLQWKLD 60
           M+     G   G ++  A+A P  R+ + L+ L ++A   F +FAALGTWQVYRLQWKL 
Sbjct: 1   MTDVTEQGSGTGSQTEPAAATP--RSGSRLIWLVVVASLLFTLFAALGTWQVYRLQWKLA 58

Query: 61  LIAKVDARVHAAPTAPPGPQDWPQVSAERDEYKRVDLRGRYLYSKTVAVQASTDLGSGSW 120
           LI +V+ RVHAAP   P  + W QV+A  DEY+ V + G  L+   V V A T+LGSG W
Sbjct: 59  LIERVEQRVHAAPVDAPQREHWSQVTAASDEYRHVRVSGVLLHQHAVKVMAVTELGSGFW 118

Query: 121 LLTPLQMADGVVVLVNRGFVSTSPIKLAELHLPDAPADQATEVTGLLRMSEQGGGFLRSN 180
           LLTPLQ ADG +VL+NRGF+ +  +   E   P  PA +   V+GLLR+SE GGGFLR N
Sbjct: 119 LLTPLQTADGSIVLINRGFIPS--LSYVE---PQPPATEIV-VSGLLRISEPGGGFLREN 172

Query: 181 DAAQNRWYSRDVKAIAQARGLEPGKVAPYFIDADQASAQADAAVAPD--AQKPVGGLTVI 238
           DAA  RWYSRDV AIA A+ L    VAPYFID D A  Q+  A + D  A  P+GGLTVI
Sbjct: 173 DAAGGRWYSRDVAAIAAAQHL--SSVAPYFIDQD-ARPQSREASSVDRAAVPPIGGLTVI 229

Query: 239 AFHNSHLVYALTWYALALMSLGAGYWVIRDERR 271
           +F+N+HLVYALTWY LALM + A +WV+R+ERR
Sbjct: 230 SFNNNHLVYALTWYVLALMVIAACWWVLREERR 262


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 504,894
Number of extensions: 17936
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 202
Effective length of database: 733,452
Effective search space: 148157304
Effective search space used: 148157304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)