BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2154.p
         (158 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095867|ref|YP_001100942.1| cytochrome o ubiquinol oxidase ...   133   3e-33

>gi|134095867|ref|YP_001100942.1| cytochrome o ubiquinol oxidase
           subunit IV [Herminiimonas arsenicoxydans]
          Length = 136

 Score =  133 bits (335), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 69/98 (70%), Positives = 83/98 (84%)

Query: 33  TMKDYVTGFVLAVILTAIPFWMVMHKTISSSATLGIVLLVFAAVQIVVHIKYFLHMNGKS 92
           ++K Y  GF+L+VILTAIPFWMVM+  +  S T G+V+L FAAVQIVVH+ YFLHMN KS
Sbjct: 24  SLKSYAIGFILSVILTAIPFWMVMNDVLKDSGTTGLVILGFAAVQIVVHMIYFLHMNTKS 83

Query: 93  EGGWNMLAMIFTIVIVVIALSGSLWVMYHLNHNMMPTM 130
           EGGW+MLA+IFT+VIVVI L+GSLWVMYH+N NMMP M
Sbjct: 84  EGGWSMLALIFTVVIVVIVLAGSLWVMYHMNTNMMPGM 121


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.134    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 252,521
Number of extensions: 8090
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 83
Effective length of database: 753,222
Effective search space: 62517426
Effective search space used: 62517426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 125 (52.8 bits)