BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2153.p
         (208 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095868|ref|YP_001100943.1| cytochrome o ubiquinol oxidase ...   323   5e-90
gi|134094349|ref|YP_001099424.1| cytochrome-C oxidase subunit II...    90   7e-20
gi|134096074|ref|YP_001101149.1| cytochrome c oxidase polypeptid...    90   9e-20

>gi|134095868|ref|YP_001100943.1| cytochrome o ubiquinol oxidase
           subunit III [Herminiimonas arsenicoxydans]
          Length = 214

 Score =  323 bits (827), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 155/207 (74%), Positives = 174/207 (84%)

Query: 2   SEAINHTADATPSSRYFVRHHHPENGTLLGFWIYLMSDCLIFACLFACYAVLGRNYAGGP 61
           S  I+  + A  S+RY+V+ HHPE+ T LGFWIYLMSDCLIFACLFA YAVLGR+YAGGP
Sbjct: 8   SADISAMSSADASTRYYVKEHHPESSTSLGFWIYLMSDCLIFACLFATYAVLGRSYAGGP 67

Query: 62  TGAELFDLPLVALNTALLLLSSITYGFAMLAMQAKKQQNTIFWLIITGLLGAGFIYFELY 121
           TGAELFDLPLVA+NTA LL+SSITYG AML     + ++T+ WL ITG+LGAGF+  ELY
Sbjct: 68  TGAELFDLPLVAMNTAFLLVSSITYGVAMLEAHRNRVRSTLIWLAITGMLGAGFLALELY 127

Query: 122 EFLHLIHEGAGPSRSGFLTSFFALVGTHGLHVTFGIIWLVVLLFQINKHGLTEANGRRLM 181
           EF HLIHEGAGP  S FLTSFFALVGTHGLHVTFGIIWL+VL+FQ+ K GL   N RRLM
Sbjct: 128 EFNHLIHEGAGPQTSAFLTSFFALVGTHGLHVTFGIIWLIVLMFQVGKFGLNVENKRRLM 187

Query: 182 CLSMFWHFLDVVWIGVFTFVYLMGVLP 208
           CLSMFWHFLDV+WIGVFTFVYLMGVLP
Sbjct: 188 CLSMFWHFLDVIWIGVFTFVYLMGVLP 214


>gi|134094349|ref|YP_001099424.1| cytochrome-C oxidase subunit III
           oxidoreductase protein [Herminiimonas arsenicoxydans]
          Length = 230

 Score = 90.1 bits (222), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 102/187 (54%), Gaps = 16/187 (8%)

Query: 33  WIYLMSDCLIFACLFACY-AVLGRNYAGGPTGAELF-------DLPL--VALNTALLLLS 82
           WI+L+SD  IF+C    Y  V     A  P  +E+F       D+PL  +A+ T +L+ S
Sbjct: 43  WIFLLSDTFIFSCFLTGYMTVRLTTTAAWPNPSEVFSLNIGGTDMPLLLIAIMTFVLISS 102

Query: 83  SITYGFAMLAMQAKKQQNTIFWLIITGLLGAGFIYFELYEFLHLIHEGAGP-----SRSG 137
           S T   A+     + +  T   ++ T LLGA F+  + +E+  LI EG  P       + 
Sbjct: 103 SGTMAMAVNYAYRRNRVTTGILMLATALLGASFVGMQAFEWSKLIAEGVRPWGNPMGAAQ 162

Query: 138 FLTSFFALVGTHGLHVTFGIIWLVVLLFQINKHGLTEANGRRLMCLS-MFWHFLDVVWIG 196
           F ++FF + G HGLHV+ G+I+LV++  ++ +    +    +++ ++ ++WHF+D+VW+ 
Sbjct: 163 FGSTFFMITGFHGLHVSAGVIYLVIVASRVLRGRYEKTGNYQIVEIAGLYWHFVDLVWVF 222

Query: 197 VFTFVYL 203
           +F   YL
Sbjct: 223 IFALFYL 229


>gi|134096074|ref|YP_001101149.1| cytochrome c oxidase polypeptide
           III [Herminiimonas arsenicoxydans]
          Length = 288

 Score = 89.7 bits (221), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 79/132 (59%), Gaps = 1/132 (0%)

Query: 74  LNTALLLLSSITYGFAMLAMQAKKQQNTIFWLIITGLLGAGFIYFELYEFLHLIHEGAGP 133
           +NTALLL S +T   +  A++  ++  T FWL  T LLGA F+ F++YE++H   +    
Sbjct: 157 INTALLLTSGVTLTLSHHALRENQRGKTAFWLAATVLLGAVFMGFQVYEYMHAYSDLNLK 216

Query: 134 SRSG-FLTSFFALVGTHGLHVTFGIIWLVVLLFQINKHGLTEANGRRLMCLSMFWHFLDV 192
             SG + ++FF L G HG HVT G I L V+L+++ K   T  N       + +WHF+DV
Sbjct: 217 LTSGVYGSTFFLLTGFHGFHVTLGAIMLSVVLYRVMKGHFTADNHFAFEGAAWYWHFVDV 276

Query: 193 VWIGVFTFVYLM 204
           VW+G++  VY +
Sbjct: 277 VWLGLYVVVYWL 288


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.332    0.145    0.476 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 401,001
Number of extensions: 14795
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 3
Length of query: 208
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 130
Effective length of database: 743,337
Effective search space: 96633810
Effective search space used: 96633810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 126 (53.1 bits)