BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2152.p (667 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095869|ref|YP_001100944.1| cytochrome o ubiquinol oxidase ... 1133 0.0 gi|134096077|ref|YP_001101152.1| cytochrome c oxidase polypeptid... 409 e-115 gi|134094347|ref|YP_001099422.1| putativecytochrome BB3 subunit ... 330 1e-91 >gi|134095869|ref|YP_001100944.1| cytochrome o ubiquinol oxidase subunit I [Herminiimonas arsenicoxydans] Length = 667 Score = 1133 bits (2930), Expect = 0.0, Method: Compositional matrix adjust. Identities = 550/667 (82%), Positives = 608/667 (91%) Query: 1 MSDNFDLIKLIFGRLSLEAIPYHEPILLGTFAMVALGGIVVLGLLTKYRLWGMLWRDWFT 60 M D+ DL KLIFGRLS +AIP+HEPILL TFAMV LGG+ ++G LT YR+WG LWRDW T Sbjct: 1 MQDHTDLTKLIFGRLSWDAIPFHEPILLITFAMVLLGGVAMVGALTYYRVWGTLWRDWIT 60 Query: 61 SIDHKRIGIMYIVLAIVMLLRGFADALMMRAQQAISFGDNAGFLPPHHYDQVFTAHGVIM 120 SIDHK+IGIMY++L +VML+RGFADALMMRAQQA++FGDNAGFLPPHHYDQ+FTAHGVIM Sbjct: 61 SIDHKKIGIMYMILGLVMLMRGFADALMMRAQQAMAFGDNAGFLPPHHYDQIFTAHGVIM 120 Query: 121 IFFVAMPLVTGLMNYVVPLQIGARDVAFPFLNNFSFWMTTFGALLVMASLFVGEFARTGW 180 IFFVAMPLVTGLMNYVVPLQIGARDVAFPFLNNFSFWMTTFGA+L+M SLFVGEFA+TGW Sbjct: 121 IFFVAMPLVTGLMNYVVPLQIGARDVAFPFLNNFSFWMTTFGAVLIMVSLFVGEFAKTGW 180 Query: 181 LAYPPLSGILYSPDVGVDYYIWALQVAGVGTLLSGINLVVTIVKMRAPGMNMMKMPVFTW 240 LAYPPLSGIL SPDVGVDYYIWALQVAGVGT LSGINL+ TIVKMRAPGM+MMKMPVFTW Sbjct: 181 LAYPPLSGILASPDVGVDYYIWALQVAGVGTTLSGINLIATIVKMRAPGMDMMKMPVFTW 240 Query: 241 TSLCTNVLIIAAFPVLTAVLAMLSLDRVFGTNFFTNDMGGNAMMYVNLIWIWGHPEVYIL 300 T+LCTNVLI+A+FPVLTAVLAMLSLDR+ T+FFTND GGNAMMYVNLIWIWGHPEVYIL Sbjct: 241 TALCTNVLIVASFPVLTAVLAMLSLDRMVDTHFFTNDGGGNAMMYVNLIWIWGHPEVYIL 300 Query: 301 VLPAFGVFSEIVSTFSGKRLFGYTSMVYASVVITILSYLVWLHHFFTMGSGASVNSFFGI 360 +LP FGVFSE+VSTFS KR+FGYTSMVYA+VVITILSY+VWLHHFFTMGSGASVNSFFGI Sbjct: 301 ILPLFGVFSEVVSTFSAKRIFGYTSMVYATVVITILSYMVWLHHFFTMGSGASVNSFFGI 360 Query: 361 TTMIISIPTGAKIFNWLFTMYRGRIRFEVPMLWTIGFMVTFVIGGMTGVLLAVPPADFVL 420 TTMIISIPTGAK+FNWLFTMY+GRI FE+PM+WTIGFM+TFV+GGMTGV+LAVPPADFVL Sbjct: 361 TTMIISIPTGAKVFNWLFTMYKGRITFELPMMWTIGFMITFVLGGMTGVMLAVPPADFVL 420 Query: 421 HNSLFLIAHFHNVIIGGVVFGMFAGINFWFPKAFGFKLNAFWGKCSFWFWLVGFYLAFMP 480 HNSLFLIAHFHNVIIGGVVFG+FA IN+WFPKAFGFKL+ FWGKCSFWFWLVGF++AFMP Sbjct: 421 HNSLFLIAHFHNVIIGGVVFGVFAAINYWFPKAFGFKLDVFWGKCSFWFWLVGFWMAFMP 480 Query: 481 LYVLGLMGVTRRMSHFDDPSLQIWFVVAAIGAGLIALGIGSFIIQIAVSIRDRKKLADVT 540 LY+LG+MGVTRRMSHF DPSLQIWF +AA+GA LIALGI S +IQ VS + R +L DVT Sbjct: 481 LYILGMMGVTRRMSHFSDPSLQIWFQIAAVGAVLIALGIASMLIQFYVSFKRRHELRDVT 540 Query: 541 GDPWDARTLEWSTSSPPPAYNFAFTPVVHDNDAWADMKKNKYQRPLGDFVEIHMPKNTGA 600 GDPW+ RTLEWSTSSPPP YNFAFTP V+D D+W+DMKKN YQRPL F IHMPKNTGA Sbjct: 541 GDPWNGRTLEWSTSSPPPDYNFAFTPKVYDTDSWSDMKKNGYQRPLQGFTAIHMPKNTGA 600 Query: 601 GFIIAALAAVLGFTLIWHMWLPAVVIFVAMIAATIIHTFNYNRDYYIPADEVVRVEAERT 660 GFII+AL+ LGF LIW MWL A + F A+IAA IIHTFNY RDYYIPADEV R E RT Sbjct: 601 GFIISALSGALGFCLIWQMWLLAGISFAAVIAAIIIHTFNYKRDYYIPADEVARTENART 660 Query: 661 RLLNSHV 667 +LL SHV Sbjct: 661 KLLESHV 667 >gi|134096077|ref|YP_001101152.1| cytochrome c oxidase polypeptide I [Herminiimonas arsenicoxydans] Length = 533 Score = 409 bits (1052), Expect = e-115, Method: Compositional matrix adjust. Identities = 225/517 (43%), Positives = 315/517 (60%), Gaps = 13/517 (2%) Query: 55 WRDWFTSIDHKRIGIMYIVLAIVMLLRGFADALMMRAQQAISFGDNAGFLPPHHYDQVFT 114 WR W + +HK IG +Y+ + MLL G A+++RA+ F + P ++Q+ T Sbjct: 26 WRRWVYATNHKDIGTLYLWFSFTMLLSGGFLAMLIRAEL---FQPGLQLMQPEFFNQLTT 82 Query: 115 AHGVIMIFFVAMPLVTGLMNYVVPLQIGARDVAFPFLNNFSFWMTTFGALLVMASLFV-G 173 HG++M+F MP G N+++PLQIGA D+AF +NNFSFW+ A+L++ S FV G Sbjct: 83 MHGIMMVFGAIMPAFVGFANWMIPLQIGASDMAFARMNNFSFWLLPPAAVLLVLSFFVPG 142 Query: 174 EFARTGWLAYPPLSGILYSPDVGVDYYIWALQVAGVGTLLSGINLVVTIVKMRAPGMNMM 233 GW Y PLS + G+D I+AL + G +++ IN++VT++ MRAPGM +M Sbjct: 143 GATAAGWTLYAPLSTQM---GPGMDMAIFALHIMGASSIMGSINIIVTVLNMRAPGMTLM 199 Query: 234 KMPVFTWTSLCTNVLIIAAFPVLTAVLAMLSLDRVFGTNFFTNDMGGNAMMYVNLIWIWG 293 KMP+F WT L T L+IA PVL + M DR FGT+FF GG+ +MY ++ W +G Sbjct: 200 KMPMFCWTWLITAYLLIAVMPVLAGAITMTLTDRHFGTSFFNAAGGGDPVMYQHIFWFFG 259 Query: 294 HPEVYILVLPAFGVFSEIVSTFSGKRLFGYTSMVYASVVITILSYLVWLHHFFTMGSGAS 353 HPEVYI++LPAFG+ S I+ F+ K+LFGY SMVYA+ I ILS++VW HH FT G + Sbjct: 260 HPEVYIMILPAFGIVSHIIPAFARKQLFGYASMVYATASIAILSFMVWAHHMFTTGMPVT 319 Query: 354 VNSFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPMLWTIGFMVTFVIGGMTGVLLAV 413 FF TM+I++PTG KIFNW+ TM+RG + FE PML+ IGF+ F IGG TG++LAV Sbjct: 320 AQLFFMYATMLIAVPTGVKIFNWVATMWRGSMTFETPMLFAIGFIFVFTIGGFTGLILAV 379 Query: 414 PPADFVLHNSLFLIAHFHNVIIGGVVFGMFAGINFWFPKAFGFKLNAFWGKCSFWFWLVG 473 P D L ++ +++AHFH V++ G +F +FAG +W PK GF N GK FW L+ Sbjct: 380 TPIDIQLQDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKWTGFMYNETRGKIHFWGSLIL 439 Query: 474 FYLAFMPLYVLGLMGVTRRMSHFDDPSLQIWF-VVAAIGAGLIALGIGSFIIQIAVSIRD 532 F + F P++ LGL G+ RR + D P+ F V+A+IG + G+ AV I Sbjct: 440 FNITFFPMHFLGLAGMPRRYA--DYPAQFTDFNVIASIGG--LGFGLMQVYFLFAVVIPS 495 Query: 533 RKKLADVTGDPWD-ARTLEWSTSSPPPAYNFAFTPVV 568 + PWD A LEW+ SP P + F P V Sbjct: 496 IRGGTPAAAKPWDGAEGLEWTVPSPAPFHTFETPPTV 532 >gi|134094347|ref|YP_001099422.1| putativecytochrome BB3 subunit 1 [Herminiimonas arsenicoxydans] Length = 586 Score = 330 bits (847), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 208/569 (36%), Positives = 303/569 (53%), Gaps = 35/569 (6%) Query: 55 WRDWFTSIDHKRIGIMYIVLAIVMLLRGFADALMMRAQQAISFGDNAGFLPPHHYDQVFT 114 W + S DHK I I Y +AI + L G A + +MR Q + F F+ HY Q T Sbjct: 17 WTKYVWSQDHKVIAIQYASVAIAVGLVGVALSNLMRLQ--LGFPGRFAFIDAAHYYQFMT 74 Query: 115 AHGVIMIFFVAMPL-VTGLMNYVVPLQIGARDVAFPFLNNFSFWMTTFGALLVMASLFV- 172 HG+IM+ ++ L + G NY++PL +GARD+ FP+LN SFW+ L++MAS FV Sbjct: 75 MHGMIMVIYLLTALFLGGFGNYLIPLMVGARDMVFPYLNMLSFWVYLLSVLVLMASFFVA 134 Query: 173 GEFARTGWLAYPPLSGILYSP--DVGVDYYIWALQVAGVGTLLSGINLVVTIVKMRAPGM 230 G GW YPP + + +P + G+ + +L + V + G+N V T+++ R GM Sbjct: 135 GGPTGAGWTLYPPQAILQGTPGHEWGIILMLVSLLIFIVAATMGGLNYVTTVLQARTEGM 194 Query: 231 NMMKMPVFTWTSLCTNVLIIAAFPVLTAVLAMLSLDRVFGTNFF----------TNDMGG 280 +++MP+ W +L + AFP L M+ LD+ GT+FF T GG Sbjct: 195 TLLRMPLTVWGIFVATILALLAFPALFVSGIMMLLDKTLGTSFFMPAIVSMGQVTQYTGG 254 Query: 281 NAMMYVNLIWIWGHPEVYILVLPAFGVFSEIVSTFSGKRLFGYTSMVYASVVITILSYLV 340 + +++ +L W +GHPEVYI+ LPAFG+ S+++S + K +FGY MV+A + I +LS +V Sbjct: 255 SPLLFQHLFWFFGHPEVYIVALPAFGIVSDLISVHARKSIFGYRMMVWAILAIGVLSVVV 314 Query: 341 WLHHFFTMGSGASVNSFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPMLWTIGFMVT 400 W HH F G FF TT+II++PT K++NWL T++RG I VPML+ + F+ T Sbjct: 315 WAHHMFVSGMNPYFGFFFATTTLIIAVPTAIKVYNWLLTLWRGDIHLSVPMLFALAFIST 374 Query: 401 FVIGGMTGVLLAVPPADFVLHNSLFLIAHFHNVIIGGVVFGMFAGINFWFPKAFGFKLNA 460 F+IGG+TG+ L D L N+ F++AHFH V+ + +F GI W+PK G LN Sbjct: 375 FLIGGLTGLFLGNVSVDIPLSNTYFVVAHFHMVMGVAPILVVFGGIYHWYPKVTGRMLND 434 Query: 461 FWGKCSFWFWLVGFYLAFMPLYVLGLMGVTRRMSHFD-----DPSLQIWFVVAAIGAGLI 515 GK FW VG Y F P++ LG++G+ RR +FD S I A ++ Sbjct: 435 ALGKLHFWITFVGTYAIFFPMHYLGMLGMPRRYYNFDGYQFIPQSAHTLNTFITIAALIV 494 Query: 516 ALGIGSFIIQIAVSIRDRKKLADVTGDPWDARTLEWSTSSPPPAYNF--AFTPVVHDNDA 573 A F+ + I R A +PW A +LEW T PP + TPVV+ Sbjct: 495 ATAQLVFVANL---IWSRFYGARADSNPWRAASLEWQTPQTPPVHGNWGPHTPVVYR--- 548 Query: 574 WADMKKNKYQRPLG--DFVEIHMPKNTGA 600 WA Y P DF+ + P G Sbjct: 549 WA----YAYSVPGAPQDFIAQNAPLEEGG 573 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.331 0.144 0.470 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,309,881 Number of extensions: 55652 Number of successful extensions: 224 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 214 Number of HSP's successfully gapped: 3 Length of query: 667 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 579 Effective length of database: 710,387 Effective search space: 411314073 Effective search space used: 411314073 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 132 (55.5 bits)