BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2151.p
         (310 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095870|ref|YP_001100945.1| cytochrome o ubiquinol oxidase ...   413   e-117

>gi|134095870|ref|YP_001100945.1| cytochrome o ubiquinol oxidase
           subunit II [Herminiimonas arsenicoxydans]
          Length = 355

 Score =  413 bits (1062), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 196/279 (70%), Positives = 232/279 (83%)

Query: 21  CNTVVMNPSGDIANQQARLIIISTALMLLIIVPVIILTLLFAWRYRKSNTSAPYEPDWDH 80
           C+ V++NPSGDIA QQ +LII+S  LMLL+IVPVIILTL+FAWRYRK+NTSA YEPDWDH
Sbjct: 26  CDWVLLNPSGDIAAQQGQLIIVSVLLMLLVIVPVIILTLIFAWRYRKNNTSAKYEPDWDH 85

Query: 81  STRLELIIWGAPLLIIIALGLLTWITTHTLDPYRPLSRIDAERPLAPQVKPLVVEVVALD 140
           ST+LELIIWG PLLIII LGL+TW++TH LDPYRPL R+DA RP++   +PL +EVVALD
Sbjct: 86  STKLELIIWGGPLLIIIVLGLITWVSTHKLDPYRPLDRLDANRPISAAAEPLTIEVVALD 145

Query: 141 WKWLFIYPEQGIATVNELAAPVDVPIEFKITASNVMNSFYIPALAGQIYAMPSMETKLHA 200
           WKWLFIYPEQGIATVNELA PVDVP+ FK+T+S VMNSFYIP LAGQIY M  MET+L+A
Sbjct: 146 WKWLFIYPEQGIATVNELATPVDVPVRFKLTSSTVMNSFYIPELAGQIYTMAGMETQLNA 205

Query: 201 VINKAGEYDGFSANYSGAGFSHMRFKFHGLDQAGFDAWVQKAKAGAGKLDRAEYLKLEQP 260
           VINK  E +GFSANYSGAGFSHMRFK+HG+D   F+ WV+K KA  GKLDR  YL+LE+P
Sbjct: 206 VINKPVESEGFSANYSGAGFSHMRFKYHGMDVEDFNRWVKKVKAEGGKLDRTAYLELEKP 265

Query: 261 SEREPARLIGSIEPNLFHAIVNRCVAPNTVCMDKMMATD 299
           SEREP     ++  +L+ AI+NRCV   +VCMD+MM  D
Sbjct: 266 SEREPVTYYKTVSSDLYGAILNRCVEEGSVCMDQMMRDD 304


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 493,750
Number of extensions: 18371
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 229
Effective length of database: 733,452
Effective search space: 167960508
Effective search space used: 167960508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)