BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2150.p (447 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095871|ref|YP_001100946.1| putative transporter protein [H... 613 e-177 gi|134096160|ref|YP_001101235.1| MFS family transporter [Hermini... 245 3e-66 gi|134094613|ref|YP_001099688.1| putative sugar transport protei... 110 1e-25 >gi|134095871|ref|YP_001100946.1| putative transporter protein [Herminiimonas arsenicoxydans] Length = 449 Score = 613 bits (1582), Expect = e-177, Method: Compositional matrix adjust. Identities = 322/450 (71%), Positives = 370/450 (82%), Gaps = 8/450 (1%) Query: 3 STSIHDGQGSGQFRQQSEHP------STSHEHGAIEPGEIAVGVVIGRASEYFDFFVYAL 56 S S H Q + ++S H + + G I+PGEIA+GVVIGRASEYFDFFVYA+ Sbjct: 2 SISTHYDQTAPA--EESPHSIGNGPRNINARDGHIDPGEIAIGVVIGRASEYFDFFVYAI 59 Query: 57 ASVLVFPMLFFPNAPRLEGTLYAFVIFSFAFLARPIGTTIFMAIQKHYGREVKLTLALFM 116 ASVLVFP +FFP A +LEGTLYAF IFSFAF+ARP+GT IFM IQ+ + RE KLTLALF+ Sbjct: 60 ASVLVFPTVFFPFASKLEGTLYAFTIFSFAFIARPVGTVIFMEIQRRFSREAKLTLALFL 119 Query: 117 LGFSTAGIALLPTYDHIGVWAIILLSLLRVGQGLALGGAWDGLPSLLAMNAPQNKRGWYA 176 LG STAGIA LP++ +G AI+LL+LLR GQG+ALGG+WDGLPSLLA+NAPQNKRGWYA Sbjct: 120 LGGSTAGIAFLPSHAQLGTTAIVLLALLRCGQGVALGGSWDGLPSLLALNAPQNKRGWYA 179 Query: 177 ALGQLGAPLGFIVAASLFAYMLSNLSSADFLEWGWRYPFYVAFAINVVALFSRLRLVSAP 236 LGQLGAP+GFI+AA LFAYML L+ DF EWGWRYPF+VAFAINVVALF+RLRLVS P Sbjct: 180 MLGQLGAPIGFILAAGLFAYMLYTLAPQDFFEWGWRYPFFVAFAINVVALFARLRLVSTP 239 Query: 237 EYAKLLDERELEPAGAVELVTTQGRNIIIGALAALASYALFHLVTVFPLSWVKLYSLREA 296 EY++LLDERELEPA VE+ +QGRN+IIGALAALASYALFHLVTVFPLSW+ LYS R Sbjct: 240 EYSRLLDERELEPANVVEITRSQGRNLIIGALAALASYALFHLVTVFPLSWIVLYSERSI 299 Query: 297 TDFLVVQIWGGVIMAAGIVVSGLIADRFGRRNTLGTMALLIAILSAFVPTLMNGGESGQN 356 + FL +Q+ G + I+ SGLIADR GRR TL +A+LI I SAFVP LMNGG G+N Sbjct: 300 SQFLEIQMIGAGLAICSIIASGLIADRVGRRTTLAVLAVLIGIFSAFVPMLMNGGIFGEN 359 Query: 357 TFILIGFALLGLSYGQAAGAVTANFKTRYRYTGAALTSDLAWLVGAGFAPLVALGLSAHF 416 FI++GF LLGLSYGQAAGAV+ANF +YRYTGAALTSDLAWLVGAGFAPLVALGLSA+F Sbjct: 360 LFIIVGFILLGLSYGQAAGAVSANFPAKYRYTGAALTSDLAWLVGAGFAPLVALGLSANF 419 Query: 417 GMAYVSFYLLSGAVGSLAALSLNRALEARD 446 G+ YVS YLLSGAVGSLAALSLNRALE RD Sbjct: 420 GLGYVSLYLLSGAVGSLAALSLNRALEIRD 449 >gi|134096160|ref|YP_001101235.1| MFS family transporter [Herminiimonas arsenicoxydans] Length = 429 Score = 245 bits (625), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 151/406 (37%), Positives = 228/406 (56%), Gaps = 3/406 (0%) Query: 23 STSHEHGAI--EPGEIAVGVVIGRASEYFDFFVYALASVLVFPMLFFPNAPRLEGTLYAF 80 S+ H +G +PG + +IG E+FDF++YA A+VLVFP LFFP++ L + Sbjct: 2 SSHHANGKQVNKPGTVLFASLIGTTIEFFDFYIYATAAVLVFPTLFFPSSSPTAAMLQSL 61 Query: 81 VIFSFAFLARPIGTTIFMAIQKHYGREVKLTLALFMLGFSTAGIALLPTYDHIGVWAIIL 140 F+ AF ARPIG+ +F GR+ L AL +G ST I LLPTY IG +A +L Sbjct: 62 ATFAIAFFARPIGSAVFGHYGDRIGRKATLVAALLTMGISTVAIGLLPTYAAIGTFAPLL 121 Query: 141 LSLLRVGQGLALGGAWDGLPSLLAMNAPQNKRGWYAALGQLGAPLGFIVAASLFAYMLSN 200 L+L R GQGL LGG W G L NAP K WY QLGAPLGF ++ +F + Sbjct: 122 LALCRFGQGLGLGGEWGGAVLLATENAPPGKIAWYGCFPQLGAPLGFFLSGGIFLLLGEV 181 Query: 201 LSSADFLEWGWRYPFYVAFAINVVALFSRLRLVSAPEYAKLLDERELEPAGAVELVTTQG 260 L++ F +GWR PF + + +V L+ RL++ P + K+LD+ E + + G Sbjct: 182 LTNEQFFSYGWRIPFLASAVLVLVGLYVRLKITETPAFQKVLDKGERVKIPLATVFSEHG 241 Query: 261 RNIIIGALAALASYALFHLVTVFPLSWVKLYSLREATDFLVVQIWGGVIMAAGIVVSGLI 320 R +++G + ALA++ LF+L+TVF LSW FL++Q++ + A I VS L+ Sbjct: 242 RMLVLGTIIALATFVLFYLMTVFALSWGTTALGYSRQQFLILQLFAVIFFALTIPVSALL 301 Query: 321 ADRFGRRNTLGTMALLIAILSAFV-PTLMNGGESGQNTFILIGFALLGLSYGQAAGAVTA 379 AD++GRR T+ +++ + + + P + F+ +G AL+G++YG ++ Sbjct: 302 ADKYGRRITMIVISVAMMLFGVLIAPMFVANSIISVAIFLSLGLALMGMTYGPLGTMLSE 361 Query: 380 NFKTRYRYTGAALTSDLAWLVGAGFAPLVALGLSAHFGMAYVSFYL 425 F RYTG +LT +L + GA AP A L+ ++G+ YV +YL Sbjct: 362 LFPAEIRYTGVSLTFNLGGIFGASLAPYAATWLATNYGLQYVGYYL 407 >gi|134094613|ref|YP_001099688.1| putative sugar transport protein [Herminiimonas arsenicoxydans] Length = 554 Score = 110 bits (276), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/314 (27%), Positives = 147/314 (46%), Gaps = 23/314 (7%) Query: 42 IGRASEYFDFFVYALASVLVFPMLFFPNAPRLEGTLYAFVIFSFAFLARPIGTTIFMAIQ 101 +G E++DF++Y + ++ F P ++A + F+ FL RP G +F + Sbjct: 25 LGTVFEWYDFYLYGSLAAIIAKQFFAGTDPN-TAFIFALLAFAAGFLVRPFGAIVFGRLG 83 Query: 102 KHYGREVKLTLALFMLGFSTAGIALLPTYDHIGVWAIILLSLLRVGQGLALGGAWDGLPS 161 GR+ + + ++G ST + LLP Y IG+ A ++L +LR+ QGLALGG + G + Sbjct: 84 DMIGRKYTFLVTIVIMGGSTFVVGLLPNYASIGLAAPVILIILRILQGLALGGEYGGAAT 143 Query: 162 LLAMNAPQNKRGWYAALGQLGAPLGFIVAASLFAYMLSNLSSADFLEWGWRYPFYVAFAI 221 +A +AP KRG + + Q A +G ++ + + + F +WGWR PF V+ + Sbjct: 144 YVAEHAPHGKRGAFTSWIQTTATMGLFMSLLVILGTRTAMGEEAFADWGWRIPFLVSVFL 203 Query: 222 NVVALFSRLRLVSAPEYAKLLDERELEPAGAVELVTTQGR-NIIIGALAALAS------- 273 ++++ RL + +P + K+ E + A E G I+I AL L + Sbjct: 204 LGISVWIRLSMAESPAFVKMKAEGKTSKAPLTEAFAKWGNLKIVILALVGLTAGQAVVWY 263 Query: 274 ----YALFHLVTVFPLSWVKLYSLREATDFLVVQIWGGVIMAAGIVVSGLIADRFGRRNT 329 YALF L + L A+ L + V+ G ++D+ GR+ Sbjct: 264 TGQFYALFFLTQTLKVDGATANILIAASLLLGTPFF---------VIFGTLSDKIGRKPI 314 Query: 330 LGTMALLIAILSAF 343 + LIA L+ F Sbjct: 315 I-MAGCLIAALTYF 327 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.326 0.140 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 859,799 Number of extensions: 37466 Number of successful extensions: 208 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 205 Number of HSP's successfully gapped: 4 Length of query: 447 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 362 Effective length of database: 720,272 Effective search space: 260738464 Effective search space used: 260738464 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)