BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2140.p (122 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094525|ref|YP_001099600.1| chemotactic response regulator ... 92 6e-21 gi|134094532|ref|YP_001099607.1| chemotactic response regulator ... 75 1e-15 gi|134095910|ref|YP_001100985.1| twitching motility protein [Her... 72 9e-15 gi|134095906|ref|YP_001100981.1| putative composite two componen... 66 6e-13 gi|134095909|ref|YP_001100984.1| twitching motility protein. pil... 58 2e-10 >gi|134094525|ref|YP_001099600.1| chemotactic response regulator [Herminiimonas arsenicoxydans] Length = 121 Score = 92.4 bits (228), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 51/118 (43%), Positives = 73/118 (61%), Gaps = 1/118 (0%) Query: 4 ILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLNKLKGDPSIKLVVSDVNMPNMDGLT 63 IL VDDS ++R V L+ G V AVDG+DGL+K + LV++D NMP MDG + Sbjct: 5 ILAVDDSGSLRQMVVFSLRAAGYQVTEAVDGQDGLDKAQMQ-VFDLVLTDQNMPRMDGFS 63 Query: 64 MAEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFKKLVG 121 + +R+ V I++LTTE+S MK +G+AAG GW+VKPF + + KK++G Sbjct: 64 LIRALRALPTYQKVPILVLTTESSDEMKAKGRAAGANGWLVKPFDPQRLTEVVKKVIG 121 >gi|134094532|ref|YP_001099607.1| chemotactic response regulator [Herminiimonas arsenicoxydans] Length = 132 Score = 74.7 bits (182), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 50/125 (40%), Positives = 72/125 (57%), Gaps = 6/125 (4%) Query: 3 QILVVDDSSTVRAEVGDFLKKNGL-DVALAVDGRDGLNKLKGDPSIKLVVSDVNMPNMDG 61 + LVVDD ST+R V + LK+ G +V A DG L+KL+ + + VVSD NMPNMDG Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVMALSKLRSE-TFDFVVSDWNMPNMDG 65 Query: 62 LTMAEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKG----EAVLPTFK 117 LTM ++IR++ + + ++M+T E AG G++VKPF E + F+ Sbjct: 66 LTMLQQIRADPALSKLPVLMVTAEAKKENIIAAAQAGANGYVVKPFTAATLDEKLAKIFE 125 Query: 118 KLVGA 122 KL A Sbjct: 126 KLAAA 130 >gi|134095910|ref|YP_001100985.1| twitching motility protein [Herminiimonas arsenicoxydans] Length = 133 Score = 71.6 bits (174), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 3 QILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLNKLKGDPSIKLVVSDVNMPNMDGL 62 +I+V+DDSST+R FL + G V LA DG D L K+ D L+ D+ MP +DG Sbjct: 11 KIMVIDDSSTIRRSAEIFLGQAGYKVVLADDGFDALAKM-NDHKPALIFCDILMPRLDGY 69 Query: 63 TMAEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFKKLVG 121 I+ S +IML++++ + RG G ++ KPF +++L T ++ Sbjct: 70 QTCALIKKSAKFHSTPVIMLSSKDGLFDRARGAMVGSDAYLTKPFTKDSLLKTVREYAA 128 >gi|134095906|ref|YP_001100981.1| putative composite two component regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator protein [Herminiimonas arsenicoxydans] Length = 1969 Score = 65.9 bits (159), Expect = 6e-13, Method: Composition-based stats. Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 3/111 (2%) Query: 4 ILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLNKLKG-DPSIKLVVSDVNMPNMDGL 62 ++VVDDS TVR L + G V LA DG D L L+ P + LV D+ MP MDG Sbjct: 1847 VMVVDDSLTVRRVTQRLLTREGYQVVLAKDGVDALQHLQSVTPDVMLV--DIEMPRMDGF 1904 Query: 63 TMAEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVL 113 + IR + + IIM+T+ + + G+ ++ KP++ EA++ Sbjct: 1905 DLTRNIRDDERTRDIPIIMITSRTASKHRNYAMELGVNEYLGKPYQEEALV 1955 >gi|134095909|ref|YP_001100984.1| twitching motility protein. pilH ortholog [Herminiimonas arsenicoxydans] Length = 121 Score = 57.8 bits (138), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 1/106 (0%) Query: 1 MAQILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLNKLKGDPSIKLVVSDVNMPNMD 60 + +IL+VDDS T R + D L K G V+ A +G + L K+K D +L++ D+ MP + Sbjct: 3 IQKILIVDDSPTERYFLTDILVKKGFSVSTAENGEEALLKIKADKP-QLILMDIVMPGQN 61 Query: 61 GLTMAEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVKP 106 G + I + V II+ T++ + G G + +IVKP Sbjct: 62 GFQITRAITRDPETQDVPIIICTSKGQETDRIWGLRQGARDYIVKP 107 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.315 0.135 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 220,418 Number of extensions: 8003 Number of successful extensions: 77 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 84 Number of HSP's successfully gapped: 8 Length of query: 122 Length of database: 1,000,347 Length adjustment: 71 Effective length of query: 51 Effective length of database: 766,402 Effective search space: 39086502 Effective search space used: 39086502 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 123 (52.0 bits)