BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2136.p
         (808 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095906|ref|YP_001100981.1| putative composite two componen...   105   9e-24
gi|134094187|ref|YP_001099262.1| putative chemotaxis protein Che...    91   2e-19
gi|134094526|ref|YP_001099601.1| chemotaxis protein cheA [Hermin...    90   5e-19

>gi|134095906|ref|YP_001100981.1| putative composite two component
            regulatory (sensor histidine kinase and response
            regulator hybrid) transcription regulator protein
            [Herminiimonas arsenicoxydans]
          Length = 1969

 Score =  105 bits (262), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 72/106 (67%)

Query: 633  FMHLIRNAMDHGLESTEERLAKGKPEAGTIKLEMGVMDDMFQMALSDDGRGLALHKVRQI 692
            F HL+RNA+ HG+ES E+R A GK E G +++E+    +   +  SDDG+GL L+ +R  
Sbjct: 1529 FEHLLRNAIVHGIESREKRRAAGKSETGELRIEIRQEGNEVVIHFSDDGQGLNLNSIRSK 1588

Query: 693  GIEKNLISIDQALTDAEIARLILQPGFSTRSEVTEVSGRGVGMDAV 738
             ++  L+  + AL+DAE+  LI  PGFST  E+TE++GRG+GMD V
Sbjct: 1589 ALQNGLVKAEDALSDAEVTDLIFHPGFSTAEEITELAGRGIGMDVV 1634


>gi|134094187|ref|YP_001099262.1| putative chemotaxis protein CheA
           [Herminiimonas arsenicoxydans]
          Length = 609

 Score = 91.3 bits (225), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 115/264 (43%), Gaps = 40/264 (15%)

Query: 525 RGNNAGGDQVAAGYERHVLTIDRKHIQDSLLRL--ENVNTAN------------------ 564
           RG+  G    AAG +   + +D   + D+LL +  E+V  AN                  
Sbjct: 203 RGSGGGDKTAAAGIKEESIRVDAVKL-DALLEVAGESVQAANQASVLLEKLAQFPVEGQA 261

Query: 565 ---LHELVAVRNDVRRTLRLLGTATIEDVLAPV---IESLP----ALAADLGKAAPV--- 611
              +  L    N   R    L  AT+   + PV    +  P     LA DLGK   +   
Sbjct: 262 ATLMAALAETLNRASRYSTELQRATLSTRMQPVGKLFQKFPRLVRELAKDLGKDVDLQIE 321

Query: 612 -VSIDDNGYVVHSFASPMLQNVFMHLIRNAMDHGLESTEERLAKGKPEAGTIKLEMGVMD 670
               + +  VV S   P++     H++RN++DHG+E    R A GK     I L+     
Sbjct: 322 GAETEVDRVVVDSLYDPLV-----HMLRNSLDHGIEDNATRTANGKSTKSVILLKAWQEA 376

Query: 671 DMFQMALSDDGRGLALHKVRQIGIEKNLISIDQALTDAEIARLILQPGFSTRSEVTEVSG 730
               + +SDDG+G+   ++R   I K LI+   A T  E+ +L+  PGFST+     VSG
Sbjct: 377 SSVMIEISDDGKGMNGEQLRAKAISKGLIADTAAQTQEEMLQLVFLPGFSTKEVANSVSG 436

Query: 731 RGVGMDAVLDFVTREHGQIEIRFT 754
           RGVGMD V   V +  G I I  T
Sbjct: 437 RGVGMDVVKTAVEKHRGAITIDST 460


>gi|134094526|ref|YP_001099601.1| chemotaxis protein cheA
           [Herminiimonas arsenicoxydans]
          Length = 697

 Score = 89.7 bits (221), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 53/124 (42%), Positives = 69/124 (55%), Gaps = 9/124 (7%)

Query: 633 FMHLIRNAMDHGLESTEERLAKGKPEAGTIKLEMGVMDDMFQMALSDDGRGL----ALHK 688
             HL+RN++DHG+E  E R A GK  AG + L          + +SDDG GL     L K
Sbjct: 417 LTHLVRNSIDHGIEMPEARTAAGKAPAGQLSLSASHQGGNIIIEVSDDGGGLNRERILAK 476

Query: 689 VRQIGIEKNLISIDQALTDAEIARLILQPGFSTRSEVTEVSGRGVGMDAVLDFVTREHGQ 748
            RQ G+E     +   + D ++ +LI  PGFST   VT+VSGRGVGMD V   +T   G 
Sbjct: 477 ARQKGME-----VSNEMPDGDVWQLIFAPGFSTAEAVTDVSGRGVGMDVVKRNITAMGGA 531

Query: 749 IEIR 752
           +EIR
Sbjct: 532 VEIR 535


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.134    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,356,867
Number of extensions: 54774
Number of successful extensions: 220
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 3
Length of query: 808
Length of database: 1,000,347
Length adjustment: 89
Effective length of query: 719
Effective length of database: 707,092
Effective search space: 508399148
Effective search space used: 508399148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)