BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2134.p
         (271 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096002|ref|YP_001101077.1| DNase [Herminiimonas arsenicoxy...    75   4e-15

>gi|134096002|ref|YP_001101077.1| DNase [Herminiimonas
           arsenicoxydans]
          Length = 264

 Score = 75.1 bits (183), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 115/269 (42%), Gaps = 54/269 (20%)

Query: 46  PLKVATYNIHGARGTDGLFSPGRIARVLQEIDA---DILALQEV-------PLGGA---- 91
            L++ TYNIH  +G     +  RI  + Q I+A   D+L LQEV        L  A    
Sbjct: 2   KLRITTYNIH--KGVSSFGARPRIHALKQAINAMQSDVLFLQEVQGRHDLHALKHATDWP 59

Query: 92  --SQVDVLA--LLREATGLFAVEGPTLQSPERRYGNAVLSRYPVLATQNIDLSFGSREPR 147
             SQ D LA    + A G+ AV           +GNA+LS +P+L+++N ++S    E R
Sbjct: 60  ELSQQDFLAGDSHQCAYGMNAV------YDHGHHGNALLSCFPILSSRNQNISDHKYESR 113

Query: 148 GALDADIDCRGHMLRVIATHLGLKPAERRAQIKRLLQAFDTDQ---APVILMGDVNEWFM 204
           G L   +      +     HLGL    R+ Q   L++A        AP+I+ GD N+W  
Sbjct: 114 GILHCVVRAPEAEVHCFVIHLGLFAGSRKRQTAALIEAVSASAESGAPIIIAGDFNDWGN 173

Query: 205 ------------------------WGRALRWLVSHFEAAPAPRTFPSRWPLFALDRIWIS 240
                                   +G  LR L          RTFP+  P   LDRI++ 
Sbjct: 174 RLSEELRDTLGVTEVFDANLSRRGFGTYLRQLSGRGTKIQPARTFPAAMPFLQLDRIYVR 233

Query: 241 PRQRLLQVHVHRSPLARVASDHLPLVAHI 269
             +      +H +   ++ SDH P+VA++
Sbjct: 234 GFKVESAEVLHGAMWGKL-SDHAPIVANL 261


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 568,182
Number of extensions: 24252
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 191
Effective length of database: 736,747
Effective search space: 140718677
Effective search space used: 140718677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)