BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2131.p
         (230 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095255|ref|YP_001100330.1| leader peptidase (signal peptid...   125   2e-30

>gi|134095255|ref|YP_001100330.1| leader peptidase (signal peptidase
           I), serine protease [Herminiimonas arsenicoxydans]
          Length = 307

 Score =  125 bits (313), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 120/221 (54%), Gaps = 24/221 (10%)

Query: 19  IALMVVFRSAIADYNVVPSGSMLPTVMVGDRILVDKLAYDLRLPLTHISLMRLGEPQRGD 78
           IAL+   RS + +   +PS SM+PT+ VGD ILV+K  Y +RLP+ +  ++ +G PQRGD
Sbjct: 90  IALVFGLRSFLYEPFKIPSTSMVPTLQVGDLILVNKYTYGIRLPIINKKIIEVGHPQRGD 149

Query: 79  IVTVDSRQAGEL-LLKRIVGLPGDVVELRDNVLYINGQAASYGPARAQPEQGDRVDQARY 137
           ++     +   L  +KR+VG+PGD V  R+  L +NG+  SY P     ++ + +  ++ 
Sbjct: 150 VMVFKYPENMTLDYIKRVVGVPGDTVTYRNKRLIVNGKQVSYKPLPDYLDE-ETLSYSKL 208

Query: 138 RDESIDGMNHLVRLSAAHPSLHSSFGP-----------------VVVPADHYMMLGDNRD 180
             E+++G+ H +  +   PS  S+  P                   VPA  Y M+GDNRD
Sbjct: 209 LTENLNGVAHQILNNPRAPSYVSN--PHDFPNRDLCTYDAEGFTCKVPAGQYFMMGDNRD 266

Query: 181 NSMDSRYFGFFARNELMGRTRRIAFSLNADQYFKPRLDRFG 221
           NS+DSRY+GF     ++G+   I  +LN+   F   L R G
Sbjct: 267 NSLDSRYWGFVPDKNIVGKAFFIWLNLNS---FPNNLGRIG 304


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.140    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 454,022
Number of extensions: 19701
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 151
Effective length of database: 740,042
Effective search space: 111746342
Effective search space used: 111746342
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)