BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2129.p (517 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095761|ref|YP_001100836.1| putative outer membrane transpo... 187 8e-49 gi|134095881|ref|YP_001100956.1| outer membrane transport protei... 178 7e-46 gi|134095560|ref|YP_001100635.1| outer membrane transport protei... 166 3e-42 gi|134095533|ref|YP_001100608.1| putative RND efflux system, out... 156 3e-39 gi|134094170|ref|YP_001099245.1| putative outer membrane protein... 152 4e-38 >gi|134095761|ref|YP_001100836.1| putative outer membrane transport protein involved in copper (silver) tolerance (cusC) [Herminiimonas arsenicoxydans] Length = 502 Score = 187 bits (476), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 144/424 (33%), Positives = 209/424 (49%), Gaps = 19/424 (4%) Query: 81 WWEAYGDPILNDLIAQANAANQTIQQAAAQYRQAQATAAVARASLWPTVGAQTGATRAQT 140 W + + D L DLIAQA N+ ++ A + +A+A + RA +P + AQ G+ RA Sbjct: 66 WRDYFTDARLQDLIAQALENNRDLRAAVLRVEEARAAYGIQRAEQFPAIAAQAGSERAHV 125 Query: 141 ----NTNGVQRLGDNYTVGLN-ASWEADIWGRIRRGAEAGDANAQASADSLAAARLTIQA 195 + G + Y V L ASWE D WGR+R +A N AS ++ A +++ A Sbjct: 126 PADLSLTGKPAMSSQYHVSLGLASWEIDFWGRVRSLRDAALENYLASDEARRAVTISLVA 185 Query: 196 TLAQDYLQLRVTDLQKDLYRRTVAAYTRSLELTTHQYQAGTALRSDVAQAETQLRSAQAQ 255 +A YL L D + L R T+A+ SL + T + + G+ R ++ Q +T L AQA Sbjct: 186 QVANSYLALCELDERIALARLTIASREESLRIFTRRVEVGSTSRLNLTQVQTLLSQAQAL 245 Query: 256 WIDLDATRNQLEHAIAMLIGKAPAAFSLAPLTPADANDSAIDANAQRLQASLPQIPAGLP 315 L+ R +A+ +L+G A S +D Q LP P GLP Sbjct: 246 GAQLEQARALQANALILLVGVT---------LELPATSSRLDER----QMLLPLQP-GLP 291 Query: 316 SDLLERRPDIANAERLAAAANANIGVARAAYFPTLTLSASGGYNSLAFGQLFDTPSRVWS 375 SDLL RRPDI AE AA+A IG ARAA+FP + L+ S G S LF SR W+ Sbjct: 292 SDLLIRRPDIVAAEHQLKAAHAQIGAARAAFFPRIALTGSFGTASAELDGLFAAGSRAWT 351 Query: 376 LGAALAETIFDGGARSARNDAAVAAYDAAVAQYKQTVLAGLQDVEDNLSTLRVLDQESAV 435 +++ +FD G RS A A D AVA Y++T+ A +DV D L+ + L Q+ + Sbjct: 352 FAPSISLPLFDAGRRSNNLSLAEARRDLAVANYEKTIQAAFRDVADALAARQWLAQQLLI 411 Query: 436 QAQAVKSAQLAERLAMSQYQAGTVTYLSVVTTQATSLTNQRSAVTLLGRQLVASVALIKA 495 A+ + RL+ +Y G YL V+ Q L ++ V + L + V+L A Sbjct: 412 AQAALTTQTERARLSQLRYDNGAAAYLDVLDAQRDLLVAEQQLVQIRRALLSSQVSLYAA 471 Query: 496 TGGG 499 GGG Sbjct: 472 LGGG 475 >gi|134095881|ref|YP_001100956.1| outer membrane transport protein involved in copper (silver) tolerance [Herminiimonas arsenicoxydans] Length = 474 Score = 178 bits (451), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 147/476 (30%), Positives = 240/476 (50%), Gaps = 26/476 (5%) Query: 32 MTVLALAALLGGCAVGPDYVRPAMDLPQAYKEQGPWKVAAPRPVDDRQHWWEAYGDPILN 91 +TVLA A++L C++ P Y RP D P A A + W + D L Sbjct: 7 LTVLA-ASVLSACSMAPKYTRP--DAPVAADYPAASAAADKQQRAHETGWRNFFPDQRLQ 63 Query: 92 DLIAQANAANQTIQQAAAQYRQAQATAAVARASLWPTVGAQTGATRAQT----NTNGVQR 147 LI A A N+ ++ AA + +A+A + A L P + +RA+T + G+ Sbjct: 64 ALIGAALANNRDLRVAALRIEEARAQYNIQSADLLPNLNGTFTGSRARTPASISPTGIDS 123 Query: 148 LGDNYTVGLN-ASWEADIWGRIRRGAEAGDANAQASADSLAAARLTIQATLAQDYLQLRV 206 + Y VGL+ AS+E D +GR+ +A A+ A+ ++ AA +++ A +A+ YL R Sbjct: 124 VSSAYQVGLSLASFELDFFGRVHSLNDAALASYLATEEAQRAAHISLVAEVAKAYLAERA 183 Query: 207 TDLQKDLYRRTVAAYTRSLELTTHQYQAGTALRSDVAQAETQLRSAQAQWIDLDATRNQL 266 Q L + T+ + + +L +++ G + D+ Q E L+SA+ + L R Q Sbjct: 184 FAEQLALAQSTLKSRGTAYDLAKQRFEVGASSALDLRQNEALLQSARVAQVTLARQRAQA 243 Query: 267 EHAIAMLIGKAPAAFSLAPLTPADANDSAIDANAQRLQASLPQIPAGLPSDLLERRPDIA 326 +A+ +L+G+ F A P A + D IPAGLPSDLL +RPDI Sbjct: 244 LNALTLLVGQPLTGFPEA--QPLSAQNIVTD------------IPAGLPSDLLTQRPDIR 289 Query: 327 NAERLAAAANANIGVARAAYFPTLTLSASGGYNSLAFGQLFDTPSRVWSLGAALAETIFD 386 +AE+ AANANIG ARAA+FP ++L+A G S LFD+ +R W+ L IFD Sbjct: 290 SAEQSLLAANANIGAARAAFFPRISLTAGIGTASSTLSNLFDSGTRAWTFAPQLVLPIFD 349 Query: 387 GGARSARNDAAVAAYDAAVAQYKQTVLAGLQDVEDNLSTLRVLDQESAVQAQAVKSAQLA 446 G SA + + A+A Y++++ + ++V D L +L+++ Q + V+ AQ A Sbjct: 350 AGRNSANLTLSEVRKNIAIANYEKSIQSAFREVSDALVARDLLEEQIDAQ-RRVQEAQ-A 407 Query: 447 ERLAMS--QYQAGTVTYLSVVTTQATSLTNQRSAVTLLGRQLVASVALIKATGGGW 500 ERL ++ ++Q G + L V+ Q + ++ V +L ++ L ++ GGG Sbjct: 408 ERLKLADQRFQNGIASSLDVLDAQRELFSAEQDLVQARLLRLTNAIDLYRSLGGGL 463 >gi|134095560|ref|YP_001100635.1| outer membrane transport protein involved toxic tolerance [Herminiimonas arsenicoxydans] Length = 476 Score = 166 bits (419), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 132/427 (30%), Positives = 214/427 (50%), Gaps = 24/427 (5%) Query: 81 WWEAYGDPILNDLIAQANAANQTIQQAAAQYRQAQATAAVARASLWPTVGAQTGATRAQT 140 W + + DP L +LIA+A N+ ++ A +A+A + A +P + R+ Sbjct: 68 WRDFFVDPKLEELIARALHNNRDLRVAVLNVERARAQYQIQNAERFPALDGSVARNRSGG 127 Query: 141 NTNGVQRLGDNYTVGLNASWEADIWGRIRRGAEAGDANAQASADSLAAARLTIQATLAQD 200 N V GD Y+ L+AS+E D++GRI ++A A + +A+L++ A +A Sbjct: 128 N---VVNPGDYYSAALSASFELDLFGRIHNLSQAALEQYFAQEEGQRSAQLSLIAEIANT 184 Query: 201 YLQLRVTDLQKDLYRRTVAAYTRSLELTTHQYQAGTALRSDVAQAETQLRSAQA---QWI 257 YL + + + T + +L +++AG D++QA+T + +A+A ++ Sbjct: 185 YLTFAADLESQRIAQATFDNQQIAYDLVVKRHRAGAVSGLDLSQAQTTIETARADVARYA 244 Query: 258 DLDAT-RNQLEHAIAMLIGKAPAAFSLAPLTPADANDSAIDANAQRLQASLPQIPAGLPS 316 L AT RN A+ +L+G AP SL P D + + +PA LPS Sbjct: 245 GLVATDRN----ALTLLVG-APVEDSLLP--------QGFDLKV----SGIAPLPAQLPS 287 Query: 317 DLLERRPDIANAERLAAAANANIGVARAAYFPTLTLSASGGYNSLAFGQLFDTPSRVWSL 376 +L RRPD+ E + ANANIG ARAA+FP+++L+ S G S LFD+ ++ WS Sbjct: 288 QVLLRRPDVRQTEHVLRGANANIGAARAAFFPSISLTGSVGSASNQLSGLFDSGTKFWSF 347 Query: 377 GAALAETIFDGGARSARNDAAVAAYDAAVAQYKQTVLAGLQDVEDNLSTLRVLDQESAVQ 436 ++ IF GGA A A A D A+A+Y++ + +G ++V D L+ L Q Q Sbjct: 348 VPQISLPIFHGGALRANLGVATADRDIALARYEKAIQSGFREVADALALTSTLAQRRQAQ 407 Query: 437 AQAVKSAQLAERLAMSQYQAGTVTYLSVVTTQATSLTNQRSAVTLLGRQLVASVALIKAT 496 + +A A L+ ++YQ G ++L ++ Q T T Q+S V + V L K Sbjct: 408 QALLDAASRAYDLSKARYQYGRDSFLILLDAQRTFYTAQQSLVAAQLAEQGNRVTLYKVL 467 Query: 497 GGGWQVG 503 GGGW+ G Sbjct: 468 GGGWEEG 474 >gi|134095533|ref|YP_001100608.1| putative RND efflux system, outer membrane lipoprotein, NodT [Herminiimonas arsenicoxydans] Length = 499 Score = 156 bits (394), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 137/487 (28%), Positives = 217/487 (44%), Gaps = 35/487 (7%) Query: 32 MTVLALAALLGGCAVGPDYVRPAMDLPQAYKEQGPWKVAAPRPVD-DRQH--------WW 82 + V+ L L+ C VGPDY+R AY ++ P A + R H WW Sbjct: 11 LIVVTLIQLISACTVGPDYIRQPPPTETAYTKKDPIVTTADNNGNAQRFHTDAAISADWW 70 Query: 83 EAYGDPILNDLIAQANAANQTIQQAAAQYRQAQATAAVARASLWPTVGAQTGATR----- 137 + L + + ++ N ++Q A A +++Q +P +G ATR Sbjct: 71 NLFHSADLGEAVDRSLRNNASLQAAQASLKESQHNLQAGYGVFFPQIGGSFSATRQLPSA 130 Query: 138 ---AQTNTNGVQRLGDNYTVGLNASWEADIWGRIRRGAEAGDANAQASADSLAAARLTIQ 194 + G+ L +T+G S+ DI+G RR EA A A A LT+ Sbjct: 131 FRFGSASPVGIFNL---FTLGAAISYTLDIFGGERRMVEALGAQADYQKYVALATYLTLS 187 Query: 195 ATLAQDYLQLRVTDLQKDLYRRTVAAYTRSLELTTHQYQAGTALRSDVAQAETQLRSAQA 254 + + Q + ++ + L + +Q G A + V + L S+QA Sbjct: 188 GNVVNTAIARAAYHAQYEATQQLILRQQEQLAVAENQAAHGIAPYATVLSLRSLLASSQA 247 Query: 255 QWIDLDATRNQLEHAIAMLIGKAPAAFSLAPLTPADANDSAIDANAQRLQASLPQ-IPAG 313 + R+Q +H +A L G T + S+ D Q LPQ +P Sbjct: 248 ALAVVAQKRDQADHLLANLQGT----------TASGTYTSSFDLA----QLELPQDLPLT 293 Query: 314 LPSDLLERRPDIANAERLAAAANANIGVARAAYFPTLTLSASGGYNSLAFGQLFDTPSRV 373 LPS+L+ +RPD+ AE A+A +GVA AA FP+ +L A+ + G L D+ S+ Sbjct: 294 LPSELVRQRPDVLAAEAQLHVASAGVGVATAALFPSFSLGANYALGNTKLGNLSDSSSKF 353 Query: 374 WSLGAALAETIFDGGARSARNDAAVAAYDAAVAQYKQTVLAGLQDVEDNLSTLRVLDQES 433 WS+G+ + IF GG + AA AY A+A Y+QTVL+ Q V D L+ + Q Sbjct: 354 WSVGSGVDVPIFQGGTAWHKRRAAQDAYQQALANYRQTVLSAFQQVADVLTAIEHDAQAV 413 Query: 434 AVQAQAVKSAQLAERLAMSQYQAGTVTYLSVVTTQATSLTNQRSAVTLLGRQLVASVALI 493 QA+++ +A+ +L Y+AG V+YL V+ ++ + + LG + + AL Sbjct: 414 KAQAESLGAAEQTLKLIEVNYRAGLVSYLDVLAANTQFYQSKIAYLQALGLRYQDTTALF 473 Query: 494 KATGGGW 500 A GGGW Sbjct: 474 VALGGGW 480 >gi|134094170|ref|YP_001099245.1| putative outer membrane protein [Herminiimonas arsenicoxydans] Length = 469 Score = 152 bits (384), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 140/490 (28%), Positives = 235/490 (47%), Gaps = 30/490 (6%) Query: 24 SPFRAKKGMTVLALAALL--GGCAVGPDYVRPAMDLPQAYKEQGPWKVAAPRPVDDRQHW 81 S F ++ LA+A L GCA D +P +++P W AP ++ ++ W Sbjct: 3 SRFNFRRTHLALAVAVLFAVSGCAHNIDASKPNVEIP------ATWAEVAPAGIELQRDW 56 Query: 82 WEAYGDPILNDLIAQANAANQTIQQAAAQYRQAQATAAVARASLWP----TVGAQTGATR 137 W +G L+ LI Q+ A + + AA + QA+ TA+ A ASL+P + G TG + Sbjct: 57 WRGFGSNELSALIDQSLAGSPDLIIAAERVTQAEITASSAGASLFPLLTVSAGTDTGQVK 116 Query: 138 AQTNTNGVQRLGDNYTVGLNASWEADIWGRIRRGAEAGDANAQASADSLAAARLTIQATL 197 +G R ++ V L+ ++E D+WGR+ + +A+ AS L RLT+ + Sbjct: 117 PGPTGSGWAR-SESTGVALSVNYEVDVWGRVAATTRSANASLNASRYDLETVRLTLTTGV 175 Query: 198 AQDYLQLRVTDLQKDLYRRTVAAYTRSLELTTHQYQAGTALRSDVAQAETQLRSAQAQWI 257 A Y Q +Q + + +A + + +Y+ G A DV++ + + + +A + Sbjct: 176 ANAYFQTLALRMQLQVAQENLAIAEKLFSIVEARYRFGAASALDVSRQRSTVLAQRATIL 235 Query: 258 DLDATRNQLEHAIAMLIGKAPAAFSLAPLTPADANDSAIDANAQRLQASLPQIPAGLPSD 317 L Q A+A+L+G+ P A +A L+ +D A +P++ GLPS Sbjct: 236 PLQVQERQTVSALAILLGRQPQALQVAALS--------LDTLA------IPEVSPGLPST 281 Query: 318 LLERRPDIANAERLAAAANANIGVARAAYFPTLTLSASGGYNSLAFGQLFDTPSRVWSLG 377 L+ RRPD+A+ E A +AN+ ARAA PT++L+ S G S A L + P+ + Sbjct: 282 LITRRPDVASVEAQLLAGSANVAAARAALLPTISLTGSAGNASAALLTLGN-PAYSIGIA 340 Query: 378 AALAETIFDGGARSARNDAAVAAYDAAVAQYKQTVLAGLQDVEDNL-STLRVLDQESAVQ 436 A++ +T+FDG + R + + Y++TV L++V+D L + R +QE A Q Sbjct: 341 ASIVQTLFDGNSLRLRVETNESTRRQLAESYRRTVYTALKEVDDALGNATRNREQEQA-Q 399 Query: 437 AQAVKSAQLAERLAMSQYQAGTVTYLSVVTTQATSLTNQRSAVTLLGRQLVASVALIKAT 496 K A+ A L+ +Y+ G S++ Q T L +L + + KA Sbjct: 400 IAIKKEAERALALSELRYREGADDLNSLLDAQRTLFAADDKLTQLRLLRLTGTTDVFKAL 459 Query: 497 GGGWQVGQPD 506 GGGW Q + Sbjct: 460 GGGWSKPQTE 469 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.315 0.126 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 707,428 Number of extensions: 21281 Number of successful extensions: 102 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 88 Number of HSP's successfully gapped: 7 Length of query: 517 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 431 Effective length of database: 716,977 Effective search space: 309017087 Effective search space used: 309017087 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)