BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2128.p (420 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094274|ref|YP_001099349.1| hypothetical protein HEAR1042 [... 174 6e-45 gi|134095879|ref|YP_001100954.1| acridine efflux pump protein [H... 145 4e-36 gi|134095558|ref|YP_001100633.1| acridine efflux pump protein [H... 105 5e-24 gi|134094168|ref|YP_001099243.1| putative secretion protein [Her... 57 2e-09 >gi|134094274|ref|YP_001099349.1| hypothetical protein HEAR1042 [Herminiimonas arsenicoxydans] Length = 382 Score = 174 bits (442), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 124/393 (31%), Positives = 203/393 (51%), Gaps = 14/393 (3%) Query: 18 MSFKRTTLAVGISTALLLAGGIAAWSTMQHASAADQPTTKTAPPVAVTLARVQERDVPLY 77 M KR L +G +L G+ A+ ++ S ++ V A +++ + + Sbjct: 1 MQQKRKYLLIGAGIVVL---GLIAYFGLRDTSERNKKPDNIQ---IVKTALAEQKTISIK 54 Query: 78 LAGVGTVTANASVVVKTRIDGQLDKVGFKEGEDVKKGQLLAQIDPRALQAQLAQAEAQRA 137 G VTA +V V+ ++ + + +EG+ VK GQLL +D R+ Q+ +A+A+A+ A Sbjct: 55 AFANGYVTAINTVDVRPKVQNIVRTIHVREGQFVKAGQLLFTLDERSDQSNVAKAQAELA 114 Query: 138 KDAANLMNARLDLQRYTTLRSQDAATQQQLDTQKALVAQLEAAVKTDEAQIAYAKVQLSY 197 ++L +A L L+R L S++ +Q +DT + VA L K + A + + LS Sbjct: 115 AGQSDLADAELALKRNEDLLSRNFVSQAVVDTARNKVAALRNTSKANRAIAESSNITLSD 174 Query: 198 TTITAPISGRVGARLVDPGNIVHAADATGLVVINQIDPITLMFTLPEEAVSGINRAQRNS 257 I A ISGR+G V PG++ + +V I+Q+DPI + FTLPE ++ I Sbjct: 175 NRIAASISGRIGIISVHPGSLAQPS-GDPMVTISQLDPIAVSFTLPERELANITATYPQG 233 Query: 258 QQPLKVIAYARDSQEVLATGKLVLLDNQINTSNGTVQLKARFDNAEHKLWPGQYVNARLQ 317 P+ AR + TGKL+ +DN +T +GT+++KA+FDNA KLWPG +VN L Sbjct: 234 NAPVT----ARLPGQPEMTGKLIFIDNAADTQSGTIRMKAQFDNAAQKLWPGSFVNVSLV 289 Query: 318 MTDHGSALTVPAAAIQRNQQGTYVYAINQDDQANMQAVKVDRIQDGIAVLAAGSGVTVDQ 377 + A+ VPA A+ ++Y + D Q V V I++G AA G+ Sbjct: 290 SRNVSHAVLVPAQAVVTGPIDKFIYVVQPDATVKEQKVDVVAIEEG---QAAVIGLDAGA 346 Query: 378 RVVIDGQYKLKPGSRIVESKPQPAKAAGAGAGS 410 RVV++G L+PGS+I E++ + A + G+ Sbjct: 347 RVVVEGTQNLRPGSKISEARDKSAAPVKSSPGA 379 >gi|134095879|ref|YP_001100954.1| acridine efflux pump protein [Herminiimonas arsenicoxydans] Length = 407 Score = 145 bits (365), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 99/308 (32%), Positives = 158/308 (51%), Gaps = 8/308 (2%) Query: 92 VKTRIDGQLDKVGFKEGEDVKKGQLLAQIDPRALQAQLAQAEAQRAKDAANLMNARLDLQ 151 ++ R+ G + K F+EG DVK G L IDP +A A A A+ A L+ A L + Sbjct: 66 IRARVPGVVLKRTFREGSDVKAGATLFLIDPAQFKATYNSANAAVARAEATLLQAELKEK 125 Query: 152 RYTTLRSQDAATQQQLDTQKALVAQLEAAVKTDEAQIAYAKVQLSYTTITAPISGRVGAR 211 RY L + +A ++Q+ D A + Q EA + +A A++ L Y T+T+PISGR+G Sbjct: 126 RYKPLVATNAISKQEYDDVTATLKQAEADLAASKAARETARLSLDYATVTSPISGRIGRA 185 Query: 212 LVDPGNIVHAADATGLVVINQIDPITLMFTLPEEAVSGINRA------QRNSQQPLKVIA 265 LV G +V +AT L + QIDPI + T + + RA + + +KV Sbjct: 186 LVTEGALVGQNEATPLATVQQIDPIYVNMTQSSTEILQLQRALADGKLKSAGKGQVKVTL 245 Query: 266 YARDSQEVLATGKLVLLDNQINTSNGTVQLKARFDNAEHKLWPGQYVNARLQMTDHGSAL 325 D QE GKL+ D ++ S+G + L+A F N + +L PG YV AR++ + +A+ Sbjct: 246 VTEDGQEYAQPGKLLFSDLTVDASSGAITLRAEFPNPDSQLLPGMYVRARVEQAINENAI 305 Query: 326 TVPAAAIQRNQQGTYVYAINQDDQANMQAVKVDRIQDGIAVLAAGSGVTVDQRVVIDGQY 385 TVP AI R G V ++ ++ + V V++ G+ +V+++G Sbjct: 306 TVPQQAISRTPDGAAVMVVSAENTVVSRPVTTGAASGDSWVIS--DGLKDGDQVIVEGLQ 363 Query: 386 KLKPGSRI 393 K+KPG+ + Sbjct: 364 KIKPGATV 371 >gi|134095558|ref|YP_001100633.1| acridine efflux pump protein [Herminiimonas arsenicoxydans] Length = 403 Score = 105 bits (262), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 100/343 (29%), Positives = 164/343 (47%), Gaps = 29/343 (8%) Query: 64 VTLARVQERDVPLYLAGVGTVTANASVVVKTRIDGQLDKVGFKEGEDVKKGQLLAQIDPR 123 VT+ ++ ++V L G A V+ +++G + K F EG VK GQ L Q+D Sbjct: 40 VTVVTLKAQEVSLTRELPGRTNAFLVAEVRPQVNGIIKKRLFTEGAQVKAGQPLYQLDDA 99 Query: 124 ALQAQLAQAEAQRAKDAANLMNARLDLQRYTTLRSQDAATQQQLDTQKALVAQLEAAVKT 183 QA A A+A A+ A L +A L+ R L DA ++Q + +A ++Q +A V Sbjct: 100 IYQANYASAKAALARAQATLKSAELNATRTAELVKIDAVSRQDNENAEAALSQSKADVAA 159 Query: 184 DEAQIAYAKVQLSYTTITAPISGRVGARLVDPGNIVHAADATGLVVINQIDPITL----- 238 +A + V L Y IT+PI+GR+G V G +V A A L + Q++P+ + Sbjct: 160 AQAALQSNSVTLGYAQITSPITGRIGKSSVTQGALVTANQAAALATVQQLNPVYIDLTQS 219 Query: 239 ---MFTLPEEAVSGINRAQRNSQQPLKVIAYARDSQEVLATGKLVLLDNQINTSNGTVQL 295 + L +E +G R ++ P++++ D GKL D ++ G+ L Sbjct: 220 SSELLQLRKELAAG--RLTQSGNLPVQIV--LEDGSRYQHDGKLAFADVTVDPGTGSFAL 275 Query: 296 KARFDNAEHKLWPGQYVNARLQMTDHGSALTVPAAAIQRNQQG-TYVYAINQDDQANMQA 354 + N ++ L PG YV A + +A+ VP I R+ +G T +++D + ++ Sbjct: 276 RVTVPNPDNILMPGMYVRALIGNGVRQNAILVPQQGIARDPKGNTSAMVVDKDGKVALRP 335 Query: 355 VKVDR-------IQDGIAVLAAGSGVTVDQRVVIDGQYKLKPG 390 V V R ++DG LAAG RV++ G K+KPG Sbjct: 336 VSVSRTIGDKWLVEDG---LAAGD------RVIVAGLQKIKPG 369 >gi|134094168|ref|YP_001099243.1| putative secretion protein [Herminiimonas arsenicoxydans] Length = 481 Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 72/291 (24%), Positives = 118/291 (40%), Gaps = 38/291 (13%) Query: 66 LARVQERDVPLYLAGVGTVTANASVVVKTRIDGQLDKVGFKEGEDVKKGQLLAQIDPRAL 125 +A VQ D+ + GTV V V ++ GQL K+ + G VK+G LLA+IDP Sbjct: 54 VAEVQRGDIQDLVTATGTVQPLEYVDVGAQVSGQLKKLHIEVGSVVKEGDLLAEIDPTVF 113 Query: 126 QAQ-------LAQAEAQRAKDAANLMNARLDLQRYTTLRSQDAATQQ------------- 165 +A L +A + + L A L R L + DA T + Sbjct: 114 RATVDARRAGLRNQQATMKERESALALASLQYTRQKNLMAADATTAETLQIAEATLRAAK 173 Query: 166 -QLDTQKALVAQLEAAVKTDEAQIAYAKVQLSYTTITAPISGRVGARLVDPGNIVHA-AD 223 Q+D +A + Q ++ ++ DEA + YAK I AP++G V + G ++A + Sbjct: 174 AQIDALQAQIEQTQSTLRADEANLNYAK-------IYAPMTGTVVSLTARQGQTLNANQN 226 Query: 224 ATGLVVINQIDPITLMFTLPEEAVSGINRAQRNSQQPLKVIAYARDSQEVLATGKLVLLD 283 A ++ I + +T+ + E + +++ ++V SQ G L ++ Sbjct: 227 APTILRIADLSTMTVQTQVSEAEIGKLSKN-------MEVYFTTLGSQGRRWYGALRKIE 279 Query: 284 NQINTSNGTVQLKARFD--NAEHKLWPGQYVNARLQMTDHGSALTVPAAAI 332 +N V A FD N L P L VP +A+ Sbjct: 280 PTPTVTNNVVLYNALFDVPNNNQALMPNMTTQVFFIAATAKDVLLVPTSAV 330 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.313 0.126 0.342 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 601,791 Number of extensions: 21441 Number of successful extensions: 100 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 94 Number of HSP's successfully gapped: 8 Length of query: 420 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 336 Effective length of database: 723,567 Effective search space: 243118512 Effective search space used: 243118512 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)