BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2126.p (230 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093856|ref|YP_001098931.1| two-component system response r... 254 3e-69 gi|134094768|ref|YP_001099843.1| response regulator in two-compo... 243 4e-66 gi|134093799|ref|YP_001098874.1| response regulator in two-compo... 239 8e-65 gi|134095857|ref|YP_001100932.1| two-component regulatory system... 171 3e-44 gi|134096087|ref|YP_001101162.1| two-component system regulatory... 155 2e-39 >gi|134093856|ref|YP_001098931.1| two-component system response regulator [Herminiimonas arsenicoxydans] Length = 231 Score = 254 bits (649), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 126/225 (56%), Positives = 168/225 (74%), Gaps = 3/225 (1%) Query: 1 MKILIVEDEQKMSEYLCKGLTEQGCAVDVAYNGVDGQHLAIQHDYDVIVLDVMLPGIDGF 60 M+IL++EDE K+ +YL +GL E G V +A NG DG +A D+IVLD+MLP + G+ Sbjct: 1 MRILVIEDEPKIGDYLVRGLAESGFTVCLARNGRDGLFMATHEAVDLIVLDMMLPLLSGW 60 Query: 61 AVLRSLRT---VKQTPVIMLTARDSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRR 117 +L +LR+ + PVI LTAR VEDR+KGL GADDYLIKPF+F+ELLAR++ L RR Sbjct: 61 ELLTALRSQADKQHIPVICLTARGEVEDRVKGLELGADDYLIKPFAFVELLARIRTLLRR 120 Query: 118 GRVQEAPQLRIGDLQIDLISRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELV 177 V++ +RIGD++ID++ RK R G RI LTAKEF LL ++ARRQ E+LS++ IA V Sbjct: 121 SPVRDEDFIRIGDMEIDVMKRKVMRNGKRITLTAKEFGLLHLLARRQSEVLSRSVIASQV 180 Query: 178 WDMNFDSNTNVVEVAIKRLRAKIDAPFEQKLLHTVRGMGYVLEPR 222 WD+NF+S+TNV++ A++RLR+KID PFE KL+HT RGMGYV E R Sbjct: 181 WDINFESDTNVIDAAVRRLRSKIDDPFETKLIHTQRGMGYVCEVR 225 >gi|134094768|ref|YP_001099843.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 230 Score = 243 bits (621), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 121/222 (54%), Positives = 163/222 (73%), Gaps = 2/222 (0%) Query: 1 MKILIVEDEQKMSEYLCKGLTEQGCAVDVAYNGVDGQHLAIQHDYDVIVLDVMLPGIDGF 60 MK+LIVEDE K EYL +GL E G AVD A NG+DG HLA+ +YD+I+LDVMLP IDG+ Sbjct: 1 MKLLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGNYDLIILDVMLPDIDGW 60 Query: 61 AVLRSLRTV-KQTPVIMLTARDSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGR 119 +L++LR P + LTARD V DR+KGL GADDY++KPF+F ELLAR++ L RRG Sbjct: 61 KILQALRNAGNNVPALFLTARDGVADRVKGLELGADDYVVKPFAFSELLARVRTLLRRGI 120 Query: 120 VQE-APQLRIGDLQIDLISRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELVW 178 ++++ DL +DL R A R G R+ LT KEF LL + R +GE+L ++ IA +W Sbjct: 121 PSPLVDRMQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQIW 180 Query: 179 DMNFDSNTNVVEVAIKRLRAKIDAPFEQKLLHTVRGMGYVLE 220 D+NF+S+TNV++VAI+RLR+K+D +E KL+ T+RG+GYVLE Sbjct: 181 DINFNSDTNVIDVAIRRLRSKMDDDYEPKLISTIRGVGYVLE 222 >gi|134093799|ref|YP_001098874.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 207 Score = 239 bits (610), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 118/201 (58%), Positives = 155/201 (77%), Gaps = 2/201 (0%) Query: 22 EQGCAVDVAYNGVDGQHLAIQHDYDVIVLDVMLPGIDGFAVLRSLRTV-KQTPVIMLTAR 80 E G VD+A NG+DG H+A+ YD+++LDVMLP +DG+ +++SLR KQ PV+ LTAR Sbjct: 2 EAGFMVDLARNGLDGHHMAMNEQYDLVLLDVMLPDVDGWRIVKSLREAGKQMPVLFLTAR 61 Query: 81 DSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGRV-QEAPQLRIGDLQIDLISRK 139 V+DR+KGL GADDYLIKPF+F ELLAR++ L RRG ++ +L + DL +DL RK Sbjct: 62 GGVDDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGSAPSQSERLEVADLILDLPRRK 121 Query: 140 AFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELVWDMNFDSNTNVVEVAIKRLRAK 199 A R G +I LT KEF+LL ++ARRQGE+L ++ IA VWDMNFDS++N ++VAI+RLRAK Sbjct: 122 ATRMGQKIVLTNKEFSLLELLARRQGEVLPRSLIASQVWDMNFDSDSNAIDVAIRRLRAK 181 Query: 200 IDAPFEQKLLHTVRGMGYVLE 220 ID PFE KL+HTVRGMGY L+ Sbjct: 182 IDDPFEPKLIHTVRGMGYTLD 202 >gi|134095857|ref|YP_001100932.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 171 bits (432), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 92/230 (40%), Positives = 143/230 (62%), Gaps = 3/230 (1%) Query: 1 MKILIVEDEQKMSEYLCKGLTEQGCAVDVAYNGVDGQHLAIQHDYDVIVLDVMLPGIDGF 60 M+ILIVED+ ++ L + LT+ G AVD A NG D Y +++LD+ LP +DG Sbjct: 1 MRILIVEDDAVLAAALTRALTQAGYAVDYADNGEDANRALSNDAYALVLLDIALPKMDGL 60 Query: 61 AVLRSLRTVK-QTPVIMLTARDSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGR 119 AVLR LR K + PV++LTARD+++DR+ GL GADDY+ KPF LE AR++AL RRG+ Sbjct: 61 AVLRRLRERKSRVPVLILTARDTLDDRVAGLDLGADDYMTKPFDLLEFEARVRALIRRGQ 120 Query: 120 VQEAPQLRIGDLQIDLISRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELVWD 179 L G L+ DL + + F + ++L+ +E A+ V+ RQG++++K + + ++ Sbjct: 121 FDAGKSLTHGGLRFDLEAHRLFHNDVPVELSVRELAVFEVLLSRQGQVVTKEQMVDRLFG 180 Query: 180 MNFDSNTNVVEVAIKRLRAKIDAPFEQKLLHTVRGMGYVLEPRATADASD 229 D +N +EV + R+R K++ P+ + TVRGMGY+LE + S+ Sbjct: 181 WGDDGGSNAIEVYVHRMRKKLE-PYNIT-IRTVRGMGYLLEKSGEKERSE 228 >gi|134096087|ref|YP_001101162.1| two-component system regulatory protein [Herminiimonas arsenicoxydans] Length = 229 Score = 155 bits (392), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 88/223 (39%), Positives = 131/223 (58%), Gaps = 5/223 (2%) Query: 1 MKILIVEDEQKMSEYLCKGLTEQGCAVDVAYNGVDGQHLAIQHDYDVIVLDVMLPGIDGF 60 M+ILI+ED + L L +G +D A NG G LA QH+YD ++LD+ LPGIDG Sbjct: 1 MRILIIEDNADIVANLYAFLEPRGYVLDCAANGYAGFALAAQHEYDAVILDIKLPGIDGL 60 Query: 61 AVLRSLRTVKQ--TPVIMLTARDSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTR-- 116 + R +R Q TPV+MLTARD+++D++ G GADDYL+KPFS LE+ RL+AL R Sbjct: 61 TLCRKMRDELQNDTPVLMLTARDTLDDKVAGFDSGADDYLVKPFSLLEVEVRLKALIRRA 120 Query: 117 RGRVQEAPQLRIGDLQIDLISRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAEL 176 RG+ Q L +GDL D + + R G+ I LT F +L+ + + +++S+ + Sbjct: 121 RGKNQGTNFLSVGDLIFDTSTYQVKRDGVPIALTKTGFKILSCLMKEAPKVVSRETLELE 180 Query: 177 VWDMNFDSNTNVVEVAIKRLRAKIDAPFEQKLLHTVRGMGYVL 219 VW + +++ + I LR +D +L TV+G+GY L Sbjct: 181 VWG-DHPPDSDALRTHIHALRQALDKSHPFAMLRTVQGIGYRL 222 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.139 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 406,434 Number of extensions: 15581 Number of successful extensions: 131 Number of sequences better than 1.0e-08: 25 Number of HSP's gapped: 97 Number of HSP's successfully gapped: 25 Length of query: 230 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 151 Effective length of database: 740,042 Effective search space: 111746342 Effective search space used: 111746342 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)