BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2125.p (479 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093857|ref|YP_001098932.1| putative two-component system s... 220 1e-58 gi|134094769|ref|YP_001099844.1| sensor kinase CopS like [Hermin... 211 8e-56 gi|134093798|ref|YP_001098873.1| sensory histidine kinase in two... 202 4e-53 gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two... 97 2e-21 gi|134095799|ref|YP_001100874.1| putative two-component sensor k... 93 3e-20 >gi|134093857|ref|YP_001098932.1| putative two-component system sensory histidine kinase [Herminiimonas arsenicoxydans] Length = 467 Score = 220 bits (560), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 114/266 (42%), Positives = 169/266 (63%), Gaps = 4/266 (1%) Query: 202 RAGLAPLRRMSARAQSFSPRKLSARMPVEALPEELSVLADAFNGALERIEQAYTQLEAFN 261 R GL PLR+M+ A P KL ++ + P EL L AFN L R+++ Y +L F+ Sbjct: 194 RRGLKPLRKMARHAALVRPGKLQHQLDDQGAPSELLPLIHAFNAMLGRLQEGYLRLSQFS 253 Query: 262 ADVAHELRTPLANLIGQTQVALARERSAGEFKDVLQSNLEELDRIRSIVNDMLFLARSDQ 321 D+AHE RTP+ +L+GQ+QVAL R RSA E+K ++ SN+EEL+R+ +++ MLFLAR ++ Sbjct: 254 TDLAHEFRTPVTSLLGQSQVALGRPRSADEYKQLVISNMEELERLSRMIDSMLFLARVER 313 Query: 322 GEAATARVPARVADEVHKTADFFEFVLDDAGMGITVTGDTTTTATMETALFKRALTNLIQ 381 + + AR P V DE + +FFE + D+ G+ ++ GD A + L +RAL+NL+ Sbjct: 314 EQMSVARYPLLVQDEFDRLCNFFEDMSDERGLILSNQGDGIVMA--DAQLLRRALSNLLS 371 Query: 382 NAIQHSPQGAQLRIDIASGQDMVSVAVTNPGPAIDEQHLPRLFDRFYRVDSARQDINGSH 441 NAI+H+ +G+ + + + V ++VTN G I +H+P LFDRFYR DSAR D S Sbjct: 372 NAIRHADKGSTIELRSRQEAEFVVLSVTNTGATIGPEHMPHLFDRFYRADSARTD--SSE 429 Query: 442 GHGLGLAIVKAVARMHGGRAFASSSD 467 GLGL+IV+A+ +H GRA +S D Sbjct: 430 STGLGLSIVRAIMTLHHGRATVTSQD 455 >gi|134094769|ref|YP_001099844.1| sensor kinase CopS like [Herminiimonas arsenicoxydans] Length = 458 Score = 211 bits (536), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 110/309 (35%), Positives = 179/309 (57%), Gaps = 3/309 (0%) Query: 160 VRVTVGVDGAPYFEMRRTFLLATTISSLLGIVLAVISSYWIARAGLAPLRRMSARAQSFS 219 V V + VD A + F + ++ + V+ +W AR GL+PLR M+ARAQ+ + Sbjct: 139 VIVVIAVDKAIHTHFMSMFRTTLMLYVMVAAIATVMLGWWAARQGLSPLRTMAARAQTVT 198 Query: 220 PRKLSARMPVEALPEELSVLADAFNGALERIEQAYTQLEAFNADVAHELRTPLANLIGQT 279 + ++ RMPV+A+P E++ LA N L+R++ +L F+AD+AHELRTP++N++ QT Sbjct: 199 SQNMNERMPVDAVPTEMTDLAVKLNAMLDRLQNDIARLTEFSADLAHELRTPISNMLTQT 258 Query: 280 QVALARERSAGEFKDVLQSNLEELDRIRSIVNDMLFLARSDQGEAATARVPARVADEVHK 339 V L + RS +++D L SN EEL R+ + ++DMLFLA+++ G A + +A E Sbjct: 259 HVVLNQSRSTADYRDSLSSNAEELQRLGNTISDMLFLAQTENGLALPSVAKLNMARECQA 318 Query: 340 TADFFEFVLDDAGMGITVTGDTTTTATMETALFKRALTNLIQNAIQHSPQGAQLRIDIAS 399 +F+E + ++ + + GD + +F+RAL NL+ NAI+++P + I I S Sbjct: 319 LLEFYEALAEEKKVVLRCEGDAVVIG--DQLMFRRALNNLLSNAIRYTPSYGTISIKITS 376 Query: 400 GQDMVSVAVTNPGPAIDEQHLPRLFDRFYRVDSARQDINGSHGHGLGLAIVKAVARMHGG 459 + ++ V N G I + P LFDRF+R D +R+ + S GLGL+I +A+ + HGG Sbjct: 377 AESGTTITVQNDGEEIPAEIQPHLFDRFFRADKSRKK-SESDSAGLGLSITRAIMQAHGG 435 Query: 460 RAFASSSDG 468 S D Sbjct: 436 SVSVVSRDS 444 >gi|134093798|ref|YP_001098873.1| sensory histidine kinase in two-component regulatory system with CusR, regulation of copper resistance, senses copper ions [Herminiimonas arsenicoxydans] Length = 482 Score = 202 bits (513), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 113/295 (38%), Positives = 175/295 (59%), Gaps = 8/295 (2%) Query: 174 MRRTFLLATTISSLLGIVLAVISSYWIARAGLAPLRRMSARAQSFSPRKLSARMPVEALP 233 +R AT I +L+ +V+A + W G P+R++S ++ +L R+ +P Sbjct: 174 FKRILWWATLIVALIALVVAWFAVQW----GHRPIRKVSREIRAIRSSQLDVRLSPTDVP 229 Query: 234 EELSVLADAFNGALERIEQAYTQLEAFNADVAHELRTPLANLIGQTQVALARERSAGEFK 293 EL+ LA +FN L RIE + +L F+AD+AHELRTP+ NL QTQVAL++ RSA E++ Sbjct: 230 IELAELAVSFNDMLGRIEDGFAKLANFSADIAHELRTPVTNLSTQTQVALSQVRSADEYR 289 Query: 294 DVLQSNLEELDRIRSIVNDMLFLARSDQGEAATARVPARVADEVHKTADFFEFVLDDAGM 353 +VL SNLEE DR+ ++ DMLFLA+++ + V D+FE + +DA + Sbjct: 290 EVLYSNLEEFDRLSLMIGDMLFLAQTENDPRNLRLTNTDITGLVQGLFDYFEVLAEDANI 349 Query: 354 GITVTGDTTTTATMETALFKRALTNLIQNAIQHSPQGAQLRIDIASGQDMVSVAVTNPGP 413 +T++G + + RAL+NL+ NAI++S G+ + + + ++ V NPG Sbjct: 350 TLTLSGQVKPIIA-DRDMMLRALSNLLSNAIRYSLPGSSVIVRLHQDAKRTTICVENPGE 408 Query: 414 AIDEQHLPRLFDRFYRVDSARQDINGSHGHGLGLAIVKAVARMHGGRAFASSSDG 468 I E LP+LFDRF+RVD +RQ +G+ GLGLAIVK++ H G+ A+S +G Sbjct: 409 QIAEDDLPKLFDRFFRVDPSRQRKSGA---GLGLAIVKSIIEAHDGKVQATSRNG 460 >gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two-component regulatory system with QseB, regulates flagella and motility by quorum sensing [Herminiimonas arsenicoxydans] Length = 430 Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 106/397 (26%), Positives = 163/397 (41%), Gaps = 45/397 (11%) Query: 97 DQHVFFWIASDNAQFTFGDLTRLNPAAISHDDGKSVGRLHLPGRRYPLHIMTRTLPALDE 156 DQ + I S + F + I +G L L G+R+ R D+ Sbjct: 33 DQEILVQIWSTKGELIFTSAPNIQLQQI---EGFGFKSLSLRGKRW------RVYSEADQ 83 Query: 157 RPEVRVTVGVDGAPYFEMRRTFLLATTISSLLGIVLAVISSYWIARAGLAPLRRMSARAQ 216 + + V A EM + L + + L+ I + + + + L PL + ARA Sbjct: 84 --DRIIQVAQPKAVRNEMAASMALRSLLPFLVMIPVLALFIWIVVGRSLYPLHHL-ARAI 140 Query: 217 SFSPRKLSARMPVEALPEELSVLADAFNGALERIEQAYTQLEAFNADVAHELRTPLANLI 276 +P E P EL + A N L R++Q AF AD AHELRTPL L Sbjct: 141 GRRSSNALEPLPGERYPPELQPMLAALNDLLTRLDQTLVTQRAFVADAAHELRTPLTALK 200 Query: 277 GQTQVALARERSAGEFKDVLQSNLEELDRIRSIVNDMLFLARSDQGEAATARVPARVADE 336 Q Q+ + RE + + E L+R +V +L LAR + R+AD Sbjct: 201 LQLQL-VERENDDRQRATGFRKLHERLNRATHLVQQLLTLARHEY----------RIADR 249 Query: 337 VHKTADFFEF---VLDD---------AGMGITVTGDTTTTATMETA---LFKRALTNLIQ 381 + D + V+ D +GI + D + A M T + L NL+ Sbjct: 250 SSQKIDLRQLTARVVSDYAPQAEHKGVDLGIAINDDQGSDAAMITGNQDSLRILLGNLVD 309 Query: 382 NAIQHSPQGAQLRIDI--ASGQDMVSVAVTNPGPAIDEQHLPRLFDRFYRVDSARQDING 439 NA++++P ++ + + ++ V + V + GP I Q R+FDRFYR D G Sbjct: 310 NAVRYTPSHGRVDVTVNTSTADHTVLLRVKDNGPGIPVQDQERVFDRFYRRDG-----TG 364 Query: 440 SHGHGLGLAIVKAVARMHGGRAFASSSDGHNTIGFTI 476 G GLGL I K +A H S++D + T+ Sbjct: 365 ESGSGLGLFIAKTIATQHEATIELSTADSKGGLIVTV 401 >gi|134095799|ref|YP_001100874.1| putative two-component sensor kinase transcriptional regulatory protein [Herminiimonas arsenicoxydans] Length = 512 Score = 92.8 bits (229), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 77/284 (27%), Positives = 133/284 (46%), Gaps = 19/284 (6%) Query: 184 ISSLLGIVLAVISSYWIARAGLAPLRRMSARAQSFSPRKLSARMPVEA--LPEELSVLAD 241 + + + +A+I ++ GL PL + R ++ P LS P+++ +PEE+ L Sbjct: 203 VPEFIILPIALILVWFALTRGLRPLAELQQRIRARRPDDLS---PIDSGHVPEEIIPLVG 259 Query: 242 AFNGALERIEQAYTQLEAFNADVAHELRTPLANLIGQTQVALARERSAGEFKDVLQSNLE 301 + N LER+ Q+ + F AD AH+++TPLA + Q+++AL R+ E L+ + Sbjct: 260 SLNDMLERLSQSIKVQKRFIADAAHQMKTPLAGMRMQSELAL-RQTDHAEIHKSLEQLAK 318 Query: 302 ELDRIRSIVNDMLFLARSDQGEAATARVPARVADEVHKTADFFE-FVLDDAGMGITVTGD 360 +VN +L LAR++ T P +V + D + +V I + + Sbjct: 319 SSKSATRMVNQLLALARAENQTPQTK--PMQVLELSELARDTVQNWVQTSFNRKIDLGFE 376 Query: 361 TTTTATM---ETALFKRALTNLIQNAIQHSPQGAQLRIDIASGQD--MVSVAVTNPGPAI 415 A M + + L NLI NA+ ++P G + + + Q + + V + GP I Sbjct: 377 QPDEAVMARGDATMLHELLNNLIDNALSYTPAGGNATVRVRTDQQAGLAFLEVEDNGPGI 436 Query: 416 DEQHLPRLFDRFYRVDSARQDINGSHGHGLGLAIVKAVARMHGG 459 +F+RFYR+ + G GLGLAIV+ +A H Sbjct: 437 APHERSHIFERFYRILGS-----NVEGSGLGLAIVREIALQHNA 475 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.133 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 857,040 Number of extensions: 34774 Number of successful extensions: 230 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 195 Number of HSP's successfully gapped: 19 Length of query: 479 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 394 Effective length of database: 720,272 Effective search space: 283787168 Effective search space used: 283787168 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)