BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2124.p (316 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096490|ref|YP_001101565.1| putative phosphoglycerate dehyd... 82 3e-17 gi|134094049|ref|YP_001099124.1| putative glyoxylate reductase (... 76 2e-15 gi|134096605|ref|YP_001101680.1| glyoxylate reductase [Herminiim... 71 8e-14 gi|134096368|ref|YP_001101443.1| phosphonate dehydrogenase [Herm... 60 1e-10 >gi|134096490|ref|YP_001101565.1| putative phosphoglycerate dehydrogenase(partial) [Herminiimonas arsenicoxydans] Length = 317 Score = 82.4 bits (202), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 49/115 (42%), Positives = 68/115 (59%), Gaps = 2/115 (1%) Query: 188 LAQMLTQSDILVCLLPLTAHTRGLLDAARLALLPPQAQLINFARGPIIDDAALHQALDAG 247 L ++L Q+DI+ +PLT +TR L+ A LA + P A LIN +RG I+D+AAL QAL + Sbjct: 199 LHEVLEQADIVSLHIPLTTNTRNLIGADALARMKPDAVLINTSRGEIVDEAALAQALHSA 258 Query: 248 QLRHAVLDVFATEPLPPDAWPWSHPAVTVLPHCSAPT--DTTTASAIVAANIRHY 300 L A +DVFA EPL P + P V + PH + T T SA++A + Y Sbjct: 259 NLGGAAIDVFAQEPLAPGNALANAPRVILTPHIAGVTTESNTRVSALIAQRVAAY 313 >gi|134094049|ref|YP_001099124.1| putative glyoxylate reductase (glycolate reductase) [Herminiimonas arsenicoxydans] Length = 327 Score = 76.3 bits (186), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 116/236 (49%), Gaps = 20/236 (8%) Query: 65 PQLQWVHSVWAGVERL-VADLGQTDLQITRLIDPRLAATMAEAVLAWTLYLHR-----DM 118 PQL+ + +V G + VA + + +T D L T A+ AWTL + + Sbjct: 66 PQLKAICNVAVGYNNIDVAAATKAGIMVTNTPDV-LNETTAD--YAWTLLMANARRTSES 122 Query: 119 PYYARQQRAHQWQPLDYVLPEQR--RVGLLGLGALGEAAAVALRQARFPV-LGWSRSARQ 175 +Y R + W+ ++ + +G+LG+G +G+A +A R F + + + +R Sbjct: 123 EHYLRAGKWKNWRFDQFLGADVHGATLGILGMGRIGQA--IARRSMGFDMQVIYHNRSRL 180 Query: 176 VAGVQTFSGMA---GLAQMLTQSDILVCLLPLTAHTRGLLDAARLALLPPQAQLINFARG 232 + + A ++L +D L+ +LP + T ++ AA LAL+ P A L+N ARG Sbjct: 181 TPDQEAHANNARYVSKEELLRTADHLILVLPYSEQTHHIIGAAELALMKPTATLVNIARG 240 Query: 233 PIIDDAALHQALDAGQLRHAVLDVFATEP-LPPDAWPWSHPAVTVLPHCSAPTDTT 287 I+DD AL AL ++ A LDV+ EP L PD S+ V + PH + ++ T Sbjct: 241 GIVDDVALIAALREHRIASAGLDVYENEPALHPDFLTLSN--VVLTPHIGSASEKT 294 >gi|134096605|ref|YP_001101680.1| glyoxylate reductase [Herminiimonas arsenicoxydans] Length = 327 Score = 70.9 bits (172), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 85/188 (45%), Gaps = 13/188 (6%) Query: 104 AEAVLAWTLYL--HRDMPYYARQQRAHQWQ---------PLDYVLPEQRRVGLLGLGALG 152 A A L W L + R +P Y + WQ L VL + R +G+ G G +G Sbjct: 104 APAELTWALIMAAMRKLPQYVGNLKDGLWQIASLSSAHNTLGAVL-KGRTLGIWGYGRIG 162 Query: 153 EAAAVALRQARFPVLGWSRSARQVAGVQT-FSGMAGLAQMLTQSDILVCLLPLTAHTRGL 211 A + VL W R A + A VQ + + + + +D+L L L TRG+ Sbjct: 163 RMVAGYGQAFGMKVLVWGRDASRAAAVQDGYQAASSREEFFSTADVLSLHLRLNDATRGI 222 Query: 212 LDAARLALLPPQAQLINFARGPIIDDAALHQALDAGQLRHAVLDVFATEPLPPDAWPWSH 271 + A+ LA + A +N +R ++ AL AL+ G+ +A LDVF +EPL P + Sbjct: 223 VTASDLAHMKSSALFVNTSRAELVASDALQTALEQGRPGYAALDVFESEPLAPTSSLLRM 282 Query: 272 PAVTVLPH 279 V PH Sbjct: 283 ENVLASPH 290 >gi|134096368|ref|YP_001101443.1| phosphonate dehydrogenase [Herminiimonas arsenicoxydans] Length = 336 Score = 60.1 bits (144), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 26/154 (16%) Query: 121 YARQQRAHQWQPLDYVLP-EQRRVGLLGLGALGEAAAVALRQARF-------------PV 166 + R H W+P Y +G++G+G +G+A +A R + F PV Sbjct: 125 HVRSGTFHGWRPKLYGAGLAGSTIGIIGMGRVGKA--IAKRLSGFEMNAVYCDSVPLNPV 182 Query: 167 LGWSRSARQVAGVQTFSGMAGLAQMLTQSDILVCLLPLTAHTRGLLDAARLALLPPQAQL 226 + +ARQV+ ++LT SD +V +LP+T+ T L+DA ++ + + L Sbjct: 183 DEQAWNARQVS----------FDELLTCSDFVVPMLPMTSDTFHLIDAHAISKMRRGSYL 232 Query: 227 INFARGPIIDDAALHQALDAGQLRHAVLDVFATE 260 +N +RG ++D+ A+ +AL+ G L DVF E Sbjct: 233 LNTSRGSVVDENAVVEALNQGHLAGYAADVFEME 266 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.135 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 558,452 Number of extensions: 20518 Number of successful extensions: 70 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 70 Number of HSP's successfully gapped: 4 Length of query: 316 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 234 Effective length of database: 730,157 Effective search space: 170856738 Effective search space used: 170856738 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)