BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2122.p
         (274 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094734|ref|YP_001099809.1| putative universal stress prote...   311   3e-86

>gi|134094734|ref|YP_001099809.1| putative universal stress protein
           [Herminiimonas arsenicoxydans]
          Length = 274

 Score =  311 bits (796), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 147/274 (53%), Positives = 207/274 (75%)

Query: 1   MSYKSILVHVDQSRHAAQRIRIAAELARAQQAHLIGSAVSGISSFITMEGAAYIAAQMDG 60
           M+YK+ILVHVD S  +A RIRIAA +A A+ AHLIG+A++GIS F+  + +  + ++++ 
Sbjct: 1   MAYKTILVHVDHSPQSADRIRIAAGIALAENAHLIGTAMTGISRFLYEDHSILLNSRIEM 60

Query: 61  FRDRALAALENFDKIANSVGVPSCEKRFVDDDAEGGLALQARYADLVVVSQADLDDADDS 120
             +RA  +L +F+ I   +GVPS EKR ++DD   GL LQARY+DLVV+SQ + ++ D S
Sbjct: 61  LCERANQSLIDFEAIVKQIGVPSYEKRLINDDPAEGLVLQARYSDLVVISQKNFNEFDPS 120

Query: 121 FLTDLPEYVMLNSPRPVLIIPSAGEFKHVGKNALIAWDGSMESTRAITAALPLLRQADNV 180
            +++LPEYV L S RP+LI+P   +   +    LIAWDGSM +TRAI+ ALPLL++A +V
Sbjct: 121 LVSNLPEYVTLQSVRPILIVPYEAQPSLLANRILIAWDGSMSATRAISNALPLLKRAQDV 180

Query: 181 TVVIFNSDKRLGTHGEQPGADIALYLARHGVKVEVAQEQTPLDIGNALLSLAADKGSDLL 240
           T+V+FN+  +L  HGE PGADIALYLARHGVKV+V  ++   +IG+AL+ LA+D+G DL+
Sbjct: 181 TIVVFNAVAQLDVHGELPGADIALYLARHGVKVDVLSQENETNIGSALMVLASDRGYDLV 240

Query: 241 VMGGYGHTRFREVLLGGVTLTILKTMTLPVLMAH 274
           VMGGYGH R RE++LGGVTLT+L  M++P+LM+H
Sbjct: 241 VMGGYGHARLREIILGGVTLTVLGQMSVPILMSH 274


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 474,571
Number of extensions: 17847
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 194
Effective length of database: 736,747
Effective search space: 142928918
Effective search space used: 142928918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)