BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2121.p
         (416 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094593|ref|YP_001099668.1| hypothetical protein HEAR1369 [...   325   2e-90

>gi|134094593|ref|YP_001099668.1| hypothetical protein HEAR1369
           [Herminiimonas arsenicoxydans]
          Length = 380

 Score =  325 bits (833), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 163/374 (43%), Positives = 233/374 (62%), Gaps = 28/374 (7%)

Query: 55  AGQPLPGLELARRVEAAEPALRVTYVLTETEPGHTSNMMVEPRIDPATGKLYHLDYNQIA 114
           AG     L LA+++EA  P +RV++V    E G + +  ++ R+DPAT KL+   +NQI 
Sbjct: 6   AGTAQSSLALAQQIEARYPQVRVSFVPLHAEEGESLSFGIDARVDPATKKLFEPGFNQIF 65

Query: 115 VDPVTAEIQGRRMWGAI-SLSRENLLPFLYKLHYTMHLPEVGGIET-GIWLMGIIGIVWS 172
           +DPV+    G+R WGA+  +++E L+ FLY+LHYT+H+PE+ GI+  G+WLMG I ++W+
Sbjct: 66  IDPVSGAELGKREWGAVWPITKETLVSFLYRLHYTLHIPEMWGIDRWGLWLMGAIAMIWT 125

Query: 173 LDCFIALYLSFPN------------------------WRSWRKSFVFRWRDGGHKLQFDL 208
            D F+   L+ P                         W+ W+ ++  RWR G +KL FDL
Sbjct: 126 FDSFVGFSLTLPVRRRNAVRPSDDIADDRPVPVGKSWWQRWQPAWKVRWRGGSNKLNFDL 185

Query: 209 HRSGGVWIWVLLLVLAVSSVSMNLEGQVMRPILQTFSTLTASPFDTRTPLAPEKVPQPRI 268
           HR+  +W WVLL +LA ++ S+NL  ++  P+++T S +T SPFDTR P       +PR+
Sbjct: 186 HRAFSLWTWVLLFILAFTAFSLNLYNEIFYPVMKTVSQVTPSPFDTRAPADKHHPIEPRV 245

Query: 269 SREQAVVLGREQGHKLGLTEPVGGVFYSGMFGVYGVGFFQPGNDHGDVGLGNAWLYFDAM 328
           +    V        +    EP G +FYS  FG+YGV FF+ G+DHG  G+G A LY+D +
Sbjct: 246 AYADIVQRASSDAQQRKWVEPAGSIFYSQEFGIYGVSFFKAGDDHGAGGVGPAVLYYDGL 305

Query: 329 SGAYEGGKIPGRGSAGDIFLQAQFPLHSGRILGLTGRVLISLMGVLVAMLSVTGVILWVR 388
            G   G + P +G+A DIF+QAQFPLHSGRILGL GR+LIS MG++VAMLSVTGV++W R
Sbjct: 306 DGRLLGKRQPWKGTAADIFVQAQFPLHSGRILGLPGRILISFMGIVVAMLSVTGVVIWWR 365

Query: 389 KR--RARVQQRARL 400
           KR  RA   QR +L
Sbjct: 366 KRVSRAATAQRRKL 379


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.141    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 862,146
Number of extensions: 38459
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 332
Effective length of database: 723,567
Effective search space: 240224244
Effective search space used: 240224244
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)