BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2120.p (723 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-de... 276 3e-75 gi|134094592|ref|YP_001099667.1| putative ferrisiderophore recep... 99 9e-22 gi|134096547|ref|YP_001101622.1| catecholate siderophore recepto... 84 3e-17 >gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-dependent receptor protein [Herminiimonas arsenicoxydans] Length = 716 Score = 276 bits (705), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 222/705 (31%), Positives = 333/705 (47%), Gaps = 58/705 (8%) Query: 55 LPTVTVSAGGAGEGTQHLQSQTSAGALGSRSLLETPFSITSITAGDIADKQLNKLGDLFY 114 LP V V + +G + S G L ETP SI+ IT + D+ + D Sbjct: 34 LPEVVVMSDSESDG---IARNASVGGFSDAPLRETPASISVITHEQMQDRSIRSATDAVK 90 Query: 115 NEASVSD--NSAGYSAWASYITIRGLPADWQNSFRIDGKPFLGYGITLPYDHFERIDLLK 172 +ASV + N+ G + W S IRG D +++R DG L + + +P ++ ER ++LK Sbjct: 91 YDASVQNAYNAVGLADWFS---IRGFTLDMGSNYRKDGMVVLAHSM-IPMENKERFEVLK 146 Query: 173 GSAGFMYGFGSPGGVLNYVTKKPTDTPLRSMSVGYTSNNIWSEHVDLGGRFGKDHMFGYR 232 G AG G S GG+LNYV K+PT+ PLRS+++ + VDLGGR D FGYR Sbjct: 147 GLAGLQVGMASSGGILNYVVKRPTNEPLRSVTLEASERGTLYGAVDLGGR-SDDKRFGYR 205 Query: 233 LNVTHDQGETFNEG-HIRRNSASLALDGRLTRELTWDFQAIWQNSNSTDQTPSFVTSSLA 291 +N +++ +G + R S A D RL+ + + + S P F A Sbjct: 206 INAAGADIKSYVQGSNGERQFVSGAFDWRLSPKALLQIDLDYHHK-SQLSVPGFQLLGPA 264 Query: 292 GGRLPSVVSG----TDKNLAGPGQHLDTNFQFYQTGLTYRLNPDWKANLSYSHSTAKRF- 346 R+P+ VS +++ + P N Y LN W L A +F Sbjct: 265 Q-RIPTGVSAKTMLNNQSWSLPVTDDTNNLGI---KFEYELNEQWHTTLQ-----ANKFE 315 Query: 347 --RNEDIAMLS-------------DAAGNYSDWRSDSREGHTFDQWQAMLEGNARTGSID 391 R++ +A+ S D N D R D+ + T QAML+G G+I Sbjct: 316 LRRDDAVALASGCVAEGLSPGYCADGTFNMYDLRRDN-DKRTVMSTQAMLQGKFNAGTIK 374 Query: 392 HQLVLGASWQKQVNDYSISSVYQQIGSGNLYVQNTNAYFSNTDLQTYHNAIITQQAIFAS 451 H L LG S + ++Y+ + +++ G+G++Y N ++++F Sbjct: 375 HDLTLGMSTMNRRDNYA-NFLFESAGTGSIYYPKYNPLTLGPTNPVSLRRKDEERSVFVQ 433 Query: 452 DTLNFSQRWSLLAGGRYNQFKQDNNTTSGALSSRYDKSALTPTVALMFKPESNTTLYTSY 511 D L + ++ L AG RY Q ++ T+SG L DK L P VAL+F P+SN ++Y +Y Sbjct: 434 DVLTLNDKFKLHAGMRYTQLQRTQFTSSGGLFRHTDKDFLLPNVALVFSPQSNWSIYGTY 493 Query: 512 VESLEQGGVPGVTNTNYGSQLKPLKSKQYEIGAKTD-QQNWSATAALFRIERASEYTLDG 570 + LE G N + L P KS+Q EIG K D Q+ S AALF+I R + YT Sbjct: 494 SQGLEPGAEVPSGLVNEETVLDPNKSRQVEIGIKADLSQDISVAAALFQIHRDNNYTSGL 553 Query: 571 ALVQNGQSNYQGLELGAAYRPTSQWQVGGSLMLLDAKYERGNT----FNGNRVAGAPRNM 626 V G+ ++GLEL A R T +G S+ L A E NT G R+ P Sbjct: 554 NYVTAGKEVHRGLELSAQGRATRNLTLGASMTTLQAFAE--NTGDARVEGKRIGNVPVLK 611 Query: 627 ATAQVAYLVPQVAGLKLSADAKFTGSTMVSAANDI-----ELASYTLFNLGASYTTRIGQ 681 + + Y +PQ+ LKL+A ++ S + + I ++ Y + N+GA Y T++ Sbjct: 612 SAVFMDYTLPQMPALKLNAMWIYSSSKVFAPNAQISELNKKVDGYHVLNVGAQYKTKVSG 671 Query: 682 HDTTFRAAVNNVLDKRYW---QYQYENYIKPGDPRTFSVSAKVDF 723 TTFR ++NV DK YW Y Y+ PG PR F +SA+ DF Sbjct: 672 TKTTFRFGIDNVFDKFYWGDASNAYGGYLIPGAPRVFRLSAQFDF 716 >gi|134094592|ref|YP_001099667.1| putative ferrisiderophore receptor [Herminiimonas arsenicoxydans] Length = 725 Score = 98.6 bits (244), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 162/690 (23%), Positives = 276/690 (40%), Gaps = 93/690 (13%) Query: 55 LPTVTVSA---GGAGEGTQHLQSQTSAGALGSRSLLETPFSITSITAGDIADKQLNKLGD 111 LP V VS G + +++S SL ET ++T +T I D+ L D Sbjct: 57 LPAVNVSGVQETATGPVIGYRATRSSTATKTDTSLAETLQAVTVVTRDQIVDQGATNLQD 116 Query: 112 LFYNEASVSDNSAGYSAWASYITIRGLPAD-WQNSFRIDGKPFLGYGITLPYDHFERIDL 170 A V ++ G + + +RG D + + R + P+ ERI++ Sbjct: 117 ALTYAAGVRSDAYGLDSRTDSVLVRGASPDVYIDGLRQANDYYTSAARPDPF-TLERIEV 175 Query: 171 LKGSAGFMYGFGSPGGVLNYVTKKPTDTPLRSMSVGYTSNNIWSEHVDLGGRFGKDHMFG 230 L+G A YG GS GGV+N V+K+P + V + D+ G +D + Sbjct: 176 LRGPAAMSYGQGSTGGVVNLVSKRPQAEFQGEVGVQLGNFGRKQLQADVTGPLTEDKQWL 235 Query: 231 YRLNVTHDQGETFNEGHIRRNSASLALDGRLTRELTWD--------FQAIWQNSNSTDQT 282 YRL +T +++ + +A LTW Q ++Q + T T Sbjct: 236 YRLVAVARNADT-QVDYVKDDRTLIA------PSLTWKPNGVTSLTLQGLYQR-DRTGST 287 Query: 283 PSFVTSSLAGGRLPSV--VSGTDKNLAGPGQHLDTNFQFYQTGLTYRLNPDW--KANLSY 338 F+ AG P+V + T + + PG DT+ Q ++LN +W + N Y Sbjct: 288 SQFL--PWAGMLTPNVNGMIPTSRFIGEPGDRYDTDRQSLGYLFEHQLNDNWTFRQNFRY 345 Query: 339 SHSTAKRFRNEDIAMLSDAA-----------------GNYSDWRSDSREGHTFDQWQAML 381 + + F + + +D + G Y+D + T DQ L Sbjct: 346 AVNEVDYFTHYADSFSTDPSTGLPGGWAIDPVNQRLIGRYADDSITKVKIATIDQ---HL 402 Query: 382 EGNARTGSIDHQLVLGASWQKQVNDYSISSVYQQIGSGNLYVQNTNAYFSNTDLQTYHN- 440 + +TG + H L+ G + + D +Q G G + + N + T + Sbjct: 403 QAKLQTGPLQHDLLAGLDYTRYQRD-------RQSGFGMDTIDVYAPVYGNGVVATLADD 455 Query: 441 --AIITQQAIFASDTLNFSQRWSLLAGGRYNQFKQDNNTTSGALSSRYDKSALTPTVALM 498 ++ Q ++ D + + W + AG R+++ NN +G S + A T V +M Sbjct: 456 PQSVQRQIGLYLQDQIKIGKNWIVSAGLRHDRV---NNALAG--SEDEESRATTKRVGVM 510 Query: 499 FKPESNTTLYTSYVESLEQGGVPGVTNTNYGSQLKPLKSKQYEIGAKTDQQNWSA--TAA 556 + E+ + Y SY ES P Y + KP++ +Q E G K N + TAA Sbjct: 511 YLLENGWSPYVSYSESF----TPVAGTNAYDQRFKPVRGEQIEGGVKYMPVNGHSQFTAA 566 Query: 557 LFRIERASEYTLDGA----LVQNGQSNYQGLEL--GAAYRPTSQWQVGGSLMLLDAKYER 610 +++I+ ++ T D + +Q GQ+ +G+EL A+ PT +D Sbjct: 567 IWKIDEKNKSTTDPSNPLNQIQVGQTKNRGVELEWKASITPT-----------IDVLAHY 615 Query: 611 GNTFNGNRVAGAPRNMATA--QVAYLVPQVAGLKLSADAKFTGSTMVSAANDIELASYTL 668 T ++ PR+ A A + + + V+G L A A++ S A S TL Sbjct: 616 NYTDLDEQLDEVPRHQAAAWGKWRFSIGGVSGFALGAGARYMSSFRDGVAP--TTPSVTL 673 Query: 669 FNLGASYTTRIGQHDTTFRAAVNNVLDKRY 698 + S+ T + + VNN+ DK Y Sbjct: 674 LDALLSWDT----MNWRYALNVNNLTDKVY 699 >gi|134096547|ref|YP_001101622.1| catecholate siderophore receptor Fiu [Herminiimonas arsenicoxydans] Length = 759 Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 165/730 (22%), Positives = 274/730 (37%), Gaps = 96/730 (13%) Query: 69 TQHLQSQTSAGALGSRSLLETPFSITSITAGDIADKQLNKLGDLFYNEASVSDNSAGYSA 128 T+ ++ T + ++ LL T +IT I + + L + N V S G + Sbjct: 51 TESYKADTVSSPKFTQPLLNTTQTITVIKKELVQQQGGATLTEALRNTPGVGTFSLGENG 110 Query: 129 ---WASYITIRGLPADWQNSFRIDGKPFLGYGITLPYDHFERIDLLKGSAGFMYGFGSPG 185 I +RG D +S +DG LG I+ + E+I++ KG AG G GSP Sbjct: 111 NTNTGDAIYMRGF--DTSSSIFVDGVRDLG-SISRDIFNIEQIEVTKGPAGADTGRGSPT 167 Query: 186 GVLNYVTKKPTDTPLRSMSVGYTSNNIWSEHVDLGGRFGKDHMFGYRLNVTHDQGETFNE 245 G +N TK+PT S SV S + DL D +R+N+ D Sbjct: 168 GSINLSTKQPTMKEAYSGSVSVGSGDYKRITADLNKPLDFDGGAAFRINLLKDDSGVAGR 227 Query: 246 GHIRRN----SASLALDGRLTRELTWDFQAIWQNSNSTDQTPSF--------VTSSLAGG 293 ++ + +A+ A + ++ + Q++ P+ V ++ Sbjct: 228 DIVKNDRQGIAAAFAFGLKTNTRTYLNYLHVDQSNIPDGGVPTIGLPGYSSPVQAANPAA 287 Query: 294 RLPSVVSGTDKNLAGPGQHLDTNF--------QFYQTGLTYRLNPDWKANLSYSHST--- 342 P V L G + +NF LT R+ D ++ ++T Sbjct: 288 TPPVVAIPARPFLNGASRVNSSNFYGTVGDFDDVTADMLTARVEHDISPDVKLQNTTRFG 347 Query: 343 -------AKRFRNEDIAMLSDAAGNYSDW---RSDSREGHTFDQW--QAMLEGNARTGSI 390 F +L+ + + W RS + T + + Q L TG++ Sbjct: 348 KTSQNYLLTGFMGSAPNLLTPNPADPTTWTLARSSQMKDQTNEIFSNQTNLTAKFDTGAV 407 Query: 391 DHQLVLGASWQKQVNDYSISSVYQQIGSGNLYVQNTNAYFSNTDLQTYHNAIITQ----- 445 H LV G + + I + NLY N N Y T N ++ Sbjct: 408 KHSLVTGVELSSEKQRSLGYAGLGTISAANLY--NPNPYLVRTGYNPVGNGTNSEGRTNT 465 Query: 446 QAIFASDTLNFSQRWSLLAGGRYNQFKQDNNTTSGALSSR---YDKSA--LTPTVALMFK 500 +++ DTL S +W + G R + + D S L+ R +KS L + ++K Sbjct: 466 LSVYLFDTLELSPQWQINGGVRVDHY--DTKYESSTLNVRNATLNKSGTLLNWKLGGLYK 523 Query: 501 PESNTTLYTSYVESLEQGG---------VPGVTNTNYGSQLKPLKSKQYEIGAKTD--QQ 549 P +++LY SY S + G N NY P +++ EIGAK D + Sbjct: 524 PTEDSSLYVSYATSKQPPGGSNFALSSNANSAANVNY----DPQETRTAEIGAKWDLLDK 579 Query: 550 NWSATAALFRIERASEY---TLDGALVQNGQSNYQGLELGAAYRPTSQWQVGGSLMLLDA 606 T A++R + +E DG Q G+ +G+ELG TS WQV + Sbjct: 580 RLGLTTAIYRTDVKNEIEGNATDG-FTQTGKKRVEGVELGVVGEITSAWQVSAGYTRMRT 638 Query: 607 KYERGNTFNGNRVAG---APRNMATAQVAYLVPQVAGLKLSADAKFTGSTMVSAANDIE- 662 G N + +G P+ TA Y +P G + A+F + + Sbjct: 639 DVTAGAIVNQDGTSGLSYTPKQAFTAWTTYKLP--GGFTIGGGARFVDALHKPKDGAVGT 696 Query: 663 ---LASYTLFNLGASYTTRIGQHDTTFRAAVNNVLDKRYWQ------YQYENYIKPGDPR 713 + SY +++ ASY + + + + N+ DK Y Y+Y PG R Sbjct: 697 PQFVESYWVYDAMASYEV---SKNVSLQLNLYNLADKDYVASINKSGYRY----TPGIER 749 Query: 714 TFSVSAKVDF 723 + +SA + F Sbjct: 750 SARLSANIKF 759 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.315 0.130 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,430,640 Number of extensions: 61322 Number of successful extensions: 197 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 186 Number of HSP's successfully gapped: 4 Length of query: 723 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 634 Effective length of database: 707,092 Effective search space: 448296328 Effective search space used: 448296328 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)