BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2117.p (732 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093335|ref|YP_001098410.1| putative two-component sensor h... 100 3e-22 gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two... 77 4e-15 gi|134095107|ref|YP_001100182.1| putative oxidative stress resis... 73 6e-14 gi|134093575|ref|YP_001098650.1| putative two-component hybrid s... 69 6e-13 gi|134095936|ref|YP_001101011.1| sensor kinase PilS [Herminiimon... 68 2e-12 >gi|134093335|ref|YP_001098410.1| putative two-component sensor histidine kinase [Herminiimonas arsenicoxydans] Length = 365 Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 71/257 (27%), Positives = 123/257 (47%), Gaps = 15/257 (5%) Query: 485 TELETANQLRLD------FQEVALSNENMVKRARETLLATLGHDLRDPLQAIMMAARMIE 538 TE+ T + +R + E ++ R R+T LA LGHDLR PL A+ MA + Sbjct: 106 TEITTRDMVRFNEAIDQGLAESVVTYSESTVRTRDTFLAILGHDLRSPLAAMAMAGHYLA 165 Query: 539 VRE-HSPSSSNLSKRISSSSSRMHRLIAQVLDISRLQSGMGLDIQRRPVDVCKMVNEIVN 597 + + ++ + R+ S++ M ++ +L+ +R Q G + I D+ + ++ Sbjct: 166 LPGVGTEATLRVGSRVKRSAATMTAMVNDMLEYARGQLGGEMPITFEQADLQDIFQASLH 225 Query: 598 EARMAYPDNEIILEAEDCGEID--LDGDRISQVVSNLLSNTRHHGELGKPSTLIVFRRED 655 +AR +P E E G++ D R+ QV +NLL+N + P T++ + + Sbjct: 226 DARAVHP--ECPFELSTTGDMSGSFDSVRLQQVFTNLLNNAAQYRGKEHPVTILAEGKTE 283 Query: 656 VLTMSVSNYGAAIPSAVRDNLFKPYKKEAMGNRRNAR---GLGLGLYIVSEIVSGHGGKI 712 +T+ + N+G AIP +F+P + ++ + R LGLGL+I EI HGG I Sbjct: 284 SVTIQIKNFGPAIPPESLQTIFQPLVQLSVEEEQAGRPSTSLGLGLFIAREITLAHGGTI 343 Query: 713 EVQCD-NHIITFTVTLP 728 D + T+ LP Sbjct: 344 SATSDETNGTVMTLELP 360 >gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation [Herminiimonas arsenicoxydans] Length = 921 Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 74/279 (26%), Positives = 130/279 (46%), Gaps = 22/279 (7%) Query: 449 PEKQYSIGPLGPRLTPRGSFAVWKETVRGKSLPWDTTELETANQL------RLDFQEVAL 502 P Y PL + RG A+ R +P +L+T L R+ + EVA Sbjct: 614 PASTYFYLPLVAPMRTRGVLAIQPGNRRWILIPEQRKQLDTFAALAAIALERVHYIEVA- 672 Query: 503 SNENMVK----RARETLLATLGHDLRDPLQAIMMAARMIEVREHSPSSSN--LSKRISSS 556 + +V+ R R +LL+ L HDLR PL +++ + + + + +SS L++ + Sbjct: 673 -QDALVRMESERLRNSLLSALSHDLRTPLTSLVGLSESLTMSKPPLTSSQQELAQALHDE 731 Query: 557 SSRMHRLIAQVLDISRLQSG-MGLDIQRRPVDVCKMVNEIVNEARMAYPDNEIILE-AED 614 + RM L++ +LD++R+QSG + ++Q + ++V + ++ A +EI A D Sbjct: 732 ARRMSNLVSNLLDMARIQSGEVKFNLQW--LQFEEVVGSALRASQSAIAHHEIKTRLAPD 789 Query: 615 CGEIDLDGDRISQVVSNLLSNTRHHGELGKPSTLIVFRREDVLTMSVSNYGAAIPSAVRD 674 + D I +V+ NL+ N + G + L +SV + G +P+ + Sbjct: 790 LPLVRFDAVLIERVLCNLIENAAKYTPAGSRIVIAAEISGRFLEVSVYDNGPGLPAGQEE 849 Query: 675 NLFKPYKKEAMGNRRNAR-GLGLGLYIVSEIVSGHGGKI 712 +F + + G R +A G+GLGL I IV H G I Sbjct: 850 AIFDKFTR---GERESATPGVGLGLAICRAIVEAHQGTI 885 >gi|134095107|ref|YP_001100182.1| putative oxidative stress resistance two-coponent transmembrane sensor histidine kinase transcription regulator [Herminiimonas arsenicoxydans] Length = 455 Score = 72.8 bits (177), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 112/234 (47%), Gaps = 20/234 (8%) Query: 485 TELETANQLRLDFQEVALSNENMVKRARETLLATLGHDLRDPLQAIMMAARMIEVREHSP 544 TE+ AN F ++ + + N V+ R +LA + HDLR PL ARM E + Sbjct: 212 TEIREANH---SFNQM-VDDLNRVESDRAVVLAGISHDLRTPL------ARMQLEVEMAG 261 Query: 545 SSSNLSKRISSSSSRMHRLIAQVLDISRLQSGMGLDIQRRPVDVCKMVNEIVNEARMAYP 604 + K + S +M +I Q LD ++ + VD+ +++E +EA P Sbjct: 262 LPDDARKGMQSDLEQMDAIIGQFLDYAKPVDSSHF----KSVDLTALLSEAAHEA-ARLP 316 Query: 605 DNEIILEAEDCGEIDLDGDRISQVVSNLLSNTRHHGELGKPSTL---IVFRRE-DVLTMS 660 D ++ ED + + I +VV+NL+ N R +G+ + I R E D + + Sbjct: 317 DVQVHPFMEDKVTVLGNAIDIKRVVNNLVENARRYGKATDAHHVDIDICCRIEGDKVMLE 376 Query: 661 VSNYGAAIPSAVRDNLFKPYKKEAMGNRRNARGLGLGLYIVSEIVSGHGGKIEV 714 ++++GA +P+ L +P+ + R A G GLGL IV IV HGGK+ + Sbjct: 377 IADHGAGVPAEEIARLLRPFTRMDSA-RGQANGAGLGLAIVDRIVKRHGGKLHL 429 >gi|134093575|ref|YP_001098650.1| putative two-component hybrid sensor and regulator [Herminiimonas arsenicoxydans] Length = 468 Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 61/227 (26%), Positives = 107/227 (47%), Gaps = 13/227 (5%) Query: 512 RETLLATLGHDLRDPLQAIMMAARMI-EVREHSPSSSNLSKRISSSSSRMHRLIAQVLDI 570 +E L+ L H+LR PL I MAA ++ ++ P L IS M L+ +LD Sbjct: 106 QEEFLSMLAHELRSPLAPIAMAADLLGKITTAHPMLPKLYGIISRQVGHMAHLVDDLLDA 165 Query: 571 SRLQSGMGLDIQRRPVDVCKMVNEIVNEAR-MAYPDNE--IILEAEDCGEIDLDGDRISQ 627 SR+ +G + +Q+R + + ++++ V ++ N+ I ED I+ D R++Q Sbjct: 166 SRVSTG-NITLQKRSLLLSEIIDSAVETSQPFINQRNQQLTITLPEDTVVINGDLVRLAQ 224 Query: 628 VVSNLLSNTRHHGELGKPSTLIVFRREDVLTMSVSNYGAAIPSAVRDNLFKPYKKEAMGN 687 +NL+ N + + DV+ +S+ + G I ++ +F +++ Sbjct: 225 AFANLIINATKFTPVDGHIDISAQVLADVVKVSIKDNGMGIAPDIQPFIFDLFRQGPHSL 284 Query: 688 RRNARGLGLGLYIVSEIVSGHGGKIEVQ-----CDNHIITFTVTLPI 729 R+ GLG+GL +V +V HGG + V C + F V LPI Sbjct: 285 DRSQGGLGIGLSLVRTVVQMHGGTVSVYSAGLGCGSE---FFVVLPI 328 >gi|134095936|ref|YP_001101011.1| sensor kinase PilS [Herminiimonas arsenicoxydans] Length = 533 Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/206 (25%), Positives = 101/206 (49%), Gaps = 17/206 (8%) Query: 515 LLATLGHDLRDPLQAIMMAARMIEVREHSPSSSNLSKRISSSSSRMHRLIAQVLDISRLQ 574 L A++ H++R+PL AI AA ++ E + S L IS + +R++R+I +L +SR Sbjct: 316 LTASIAHEVRNPLSAIGHAASLLSEEELNASRQRLLTIISENVARLNRMIEDILKLSRKA 375 Query: 575 SGMGLDIQRRPVDVCKMVNEIVNEARMAYPDNEIILEAEDCG--EIDLDGDRISQVVSNL 632 P+ + + ++++ E + E ++ D ++ D + ++V NL Sbjct: 376 HQY-----HEPLCLGLLFDDVLAELHEMHAVQEGMIAIGDMAPHKVRFDPLHLREIVLNL 430 Query: 633 LSNTRHHGELGKPSTLIVFRREDV---LTMSVSNYGAAIPSAVRDNLFKPYKKEAMGNRR 689 L+N + G P ++ + V L + V + G I SAVR +LF+P+ Sbjct: 431 LTNALRYAS-GAPGSIRAYIAPGVGHRLELHVQDDGPQITSAVRAHLFEPFYTT------ 483 Query: 690 NARGLGLGLYIVSEIVSGHGGKIEVQ 715 +++G GLGLY+ E+ +G + + Sbjct: 484 SSKGTGLGLYLARELCLNNGAMLNYE 509 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,259,072 Number of extensions: 49162 Number of successful extensions: 194 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 194 Number of HSP's successfully gapped: 12 Length of query: 732 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 643 Effective length of database: 707,092 Effective search space: 454660156 Effective search space used: 454660156 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)